Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00989 ATGACTCTCTCGCGGGGCCTCGCCGTCGTGTTCTTCCTGCTCGCCCTCTACTGTGGGCTGGACCCCTTCCGCCACAGCCCAATAGCCCACTTCCCTCACTTCGAGCCCAAGAGGGTCGACATGCCCGCATGGTCCGAGGTTCCCACGGAGCAAGACAAACACAACCTGCTGCAAAAGTCGGAGATTAAGTTTCTGAACGAGGTTCAGGGACCAGAGAGCATCGCCTTTGACCCTCTCGGTCGTGGACCTTACACTGGTCTCGCCGATGGAAGAGTCGTCTTCTGGAACGCTCACTCTTGGCTTGACTTCGCTTATACCTCCCCCAACAGGTCGGAGATATGTAATCCTATAGCATCTGCAACACCATTTAGTTATGTGAAAACTGAGCATATCTGTGGGAGGCCTTTGGGACTCAGATTTGACAAGAAAACAGGTGATTTGTACATTGCAGATGCATATTTTGGGCTCCTGAAGGTGGGACCCGAGGGTGGTTTAGCAACATCTCTTGTAACCGAGGTTGAGGGAGTGCCACTAAGATTTACTAATGATGTCGATGTTGATGCGGAAGGAATTGTTTATTTTACAGAGAGCAGTTCTCATTATCAGAGGAGGAATTTCATTCAGCTGGTATTTTCTGCGGACGATAGTGGCAAGGTTGTGAAATACAACCCTGCCACTAAGGAAATCACTGTTCTTATGAGGAACATTCAATTCCCAAATGGCATTTCCTTGAGCAAGGATGGTTCCTTCTTTGTCTTTTGTGAAGGGGTTGTTGGCAGGTTACGTAAATACTGGCTGAAAGGAGAAAAAGCTGGGACTTCAGAGATTATAGCCATCCTACCTGGATTTCCTGACAATGTGAGAGTGAATGAAGATGGTGATTTTTGGGTAGCTCTTCATTGTAGAAGGTATATGTATTCATACTACAATGGTCTCTACCCAAAGATGAGGAAAATCATACTCAAGCTTCCTATACCAACAAAGACTCAATACCTGCTTCAAATAGGAGGACGCCAGCATGCAGCACTTGTCAAGTATAGCCCTGAAGGTAAACTTTTGCAGATATTGGAGGACAGTGAGGGGAAAGTTGTAAGAGCAGTGAGTGAAGTGGAGGAGAGGGACGGTAAACTCTGGCTAGGAAGTGTTCTCATGCCATTTGTTGCAGTTTACAACCTGACATGA 1182 0.4704 MTLSRGLAVVFFLLALYCGLDPFRHSPIAHFPHFEPKRVDMPAWSEVPTEQDKHNLLQKSEIKFLNEVQGPESIAFDPLGRGPYTGLADGRVVFWNAHSWLDFAYTSPNRSEICNPIASATPFSYVKTEHICGRPLGLRFDKKTGDLYIADAYFGLLKVGPEGGLATSLVTEVEGVPLRFTNDVDVDAEGIVYFTESSSHYQRRNFIQLVFSADDSGKVVKYNPATKEITVLMRNIQFPNGISLSKDGSFFVFCEGVVGRLRKYWLKGEKAGTSEIIAILPGFPDNVRVNEDGDFWVALHCRRYMYSYYNGLYPKMRKIILKLPIPTKTQYLLQIGGRQHAALVKYSPEGKLLQILEDSEGKVVRAVSEVEERDGKLWLGSVLMPFVAVYNLT 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00989 393 SUPERFAMILY Calcium-dependent phosphotriesterase 47 392 - -
Cca04g00989 393 Gene3D - 54 393 IPR011042 -
Cca04g00989 393 PANTHER STRICTOSIDINE SYNTHASE TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 7 392 - -
Cca04g00989 393 PANTHER STRICTOSIDINE SYNTHASE-RELATED 7 392 - -
Cca04g00989 393 Pfam Strictosidine synthase-like, N-terminal 59 94 - -
Cca04g00989 393 Pfam Strictosidine synthase 182 269 IPR018119 GO:0009058|GO:0016844
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00989 Cca-Chr4 10728778 10732453 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00989 - - gmx:100803331 722.62