Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00982 ATGGGAAAGAAGCAGAACGAGAGCCAGAAAACAGGGCTAGGCCGTGCCCTGGTGAGGCAGCACAACCACATGATCCAACAGAGCAAGGAAAAGTCCCGCTTCTACCGCAAGAAGGTTCTCGAATCCTACACCGAAGTCTCCGACATCGACGCCATCATCGAGCAATCCAACGAGCCCCTCCCCGCCGCCTCCACCACCCTCATAAGCCTGGACTCTGCCTCCGTTCCCATCGAAGCGACGCCGGAAGAAACGAGGAAGCAGCAGAAGCGAGAGGAGGCGCTCCACGCCGCCAGCCTCCGAGTCCCCCGCCGCCCGCCGTGGACCCCCCACATGTCCGCCGACGAGCTTCATGAAAGCGAAACGCAGGCTTTTCTGGTTTGGCGTCGCAACTTAGCGAGGCTTGAGGAGAATAAGAAGCTTGTACTTACTCCGTTTGAGAAGAATCTTGACATTTGGAGACAGCTCTGGCGGGTTGTTGAGCGAAGTGATCTGCTTGTTATGGTTGTTGATTCGCGAGATCCACTGTTCTATCGATGTCCAGACCTTGAGGCTTATGCACGAGAGGTTGATGAGCACAAACGCACATTGCTTTTGGTTAACAAGGCCGATCTTTTACCTGCTTCTATCAGAGAGAAATGGGCAGAATATTTTCGTGCCAATGATATTCTCTTTATCTTCTGGTCGGCTAAAGCTGCTACTGCAGCTCTGGAAGGCAGAAAGCTTGGTTCATCATGGGTGGATGATAACATGGGGAGAACTAATAACCCAGACACAAAGATATATGGAAGAGATGAGCTTTTGTCCCGCTTGCAATCAGAGGCAGAAGAGATAGTTGACAGAAGGAGAAATTCAGGCTCCTCTGATGCAGGATCATCTAACATTAAATCTGCCGTTGAAAATACTGCTGGTAGTTCGTCATCTAATCACGTAATTGTGGGATTTGTTGGATACCCTAATGTGGGGAAAAGTTCAACCATTAATGCTCTGGTTGGTCAAAAACGGACTGGTGTCACCTCTACTCCGGGGAAAACAAAGCACTTTCAGACATTAATTATCTCTGATAAGCTCACCCTTTGTGATTGTCCCGGATTAGTGTTTCCATCCTTCTCAAGCTCAAGGTATGAGATGATTGCTTGTGGGGTGTTGCCTATTGATAGGATGACTGAACACAGGGAATCTGTCCAAGTTGTTGCTGATAGAGTGCCGAGACATGTCATCGAGGAGATTTATAAGATAAGGCTTCCTAAACCTAAGCCATATGAGTCCCAATCCCGCCCCCCTCTGGCATCTGAGCTCTTGAGAGCATATTGTGCTTCTCGTGGGTATGTTGCCTCTAGTGGACTCCCTGATGAAACAAGAGCTTCCCGTCAGATATTGAAAGATTACATTGATGGGAAGCTGCCGCACTATGAAATGCCTCCTGGAGCATCAGACGAGGAACAAGATTTGGTAGATCCCACTGGACATGACTCAGTTGACTTGGATGCATCAGATTCATCTGATATTGAAGATTCTTCAGATGTTGAGAGTGAACTTGCACCAAATCTTGAACATGTATTGGATGACCTCAATTCATTTGACATGGCTAATGGACTTGCTCCAAAAAATATTGCTGTTAAGAAGTCTAAGGCATCTCATAAGCACCATAAAAAGCCCCAGAGGAAAAAAGATCGTTCTTGGAGAGCAGGAAAAGAAGATGCTGATGGGATGCCGGTTGCAAGGTTCTTTCAGAAACCAGCTAATACAGGTCCTTTGAAGGTTGGGTAA 1767 0.4776 MGKKQNESQKTGLGRALVRQHNHMIQQSKEKSRFYRKKVLESYTEVSDIDAIIEQSNEPLPAASTTLISLDSASVPIEATPEETRKQQKREEALHAASLRVPRRPPWTPHMSADELHESETQAFLVWRRNLARLEENKKLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDSRDPLFYRCPDLEAYAREVDEHKRTLLLVNKADLLPASIREKWAEYFRANDILFIFWSAKAATAALEGRKLGSSWVDDNMGRTNNPDTKIYGRDELLSRLQSEAEEIVDRRRNSGSSDAGSSNIKSAVENTAGSSSSNHVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISDKLTLCDCPGLVFPSFSSSRYEMIACGVLPIDRMTEHRESVQVVADRVPRHVIEEIYKIRLPKPKPYESQSRPPLASELLRAYCASRGYVASSGLPDETRASRQILKDYIDGKLPHYEMPPGASDEEQDLVDPTGHDSVDLDASDSSDIEDSSDVESELAPNLEHVLDDLNSFDMANGLAPKNIAVKKSKASHKHHKKPQRKKDRSWRAGKEDADGMPVARFFQKPANTGPLKVG 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00982 588 MobiDBLite consensus disorder prediction 540 557 - -
Cca04g00982 588 MobiDBLite consensus disorder prediction 1 15 - -
Cca04g00982 588 Gene3D - 151 368 IPR027417 -
Cca04g00982 588 PRINTS GTP1/OBG GTP-binding protein family signature 312 332 IPR006073 GO:0005525
Cca04g00982 588 PRINTS GTP1/OBG GTP-binding protein family signature 358 373 IPR006073 GO:0005525
Cca04g00982 588 MobiDBLite consensus disorder prediction 482 496 - -
Cca04g00982 588 MobiDBLite consensus disorder prediction 284 301 - -
Cca04g00982 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 442 IPR027417 -
Cca04g00982 588 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 152 367 IPR030378 GO:0005525
Cca04g00982 588 MobiDBLite consensus disorder prediction 534 588 - -
Cca04g00982 588 PANTHER LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED 8 555 IPR043358 GO:0003924
Cca04g00982 588 PANTHER GTPASE LSG1-1 8 555 - -
Cca04g00982 588 CDD HSR1_MMR1 151 367 - -
Cca04g00982 588 MobiDBLite consensus disorder prediction 1 31 - -
Cca04g00982 588 Gene3D - 371 473 IPR023179 -
Cca04g00982 588 Pfam 50S ribosome-binding GTPase 312 368 IPR006073 GO:0005525
Cca04g00982 588 MobiDBLite consensus disorder prediction 466 511 - -
Cca04g00982 588 MobiDBLite consensus disorder prediction 277 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00982 Cca-Chr4 10620750 10624843 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00982 K14539 - gmx:100817523 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00982 04 10620750 10624843 Cca04g00982 04 10620750 10624843 ECH