Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00970 ATGGGATCTGCAGACACAGAAACAAAGCAAAGAATCGAAATGGAAAAGAATGGGAAGAGAGTGGTGATCCTAGGAGGCGGCATTGCGGGTTCCCTCGTCGCCAAAAATCTCCAATTTCATGCGCATGTCACCCTCGTTGATCCGAAGGAATATTTTGAGATTACATGGGCATGTTTGAGGTCAATGGTTGAGCCACCTTTTGCTGAGAGGACGGTGATCAACCATGGAGATTACCTTACCAATGGTGACATTGTTATATCACACGCGGTCGATGTCACGGAAACTGAAGTTTTGACTGCAGATGGCCATCGAATTGGCTATGACTATCTTGTTATTGCCACTGGCCATGCAGATCGTGTCCCAAAAAGCAGAAGTGATAGACTTAAACAGTTCAGAGAAGACAATCAAAAGATAAAAGCTGCTCATTCCATTCTGATTGTTGGAGGAGGTCCCACTGGTGTGGAACTTGCTGCAGAGATAGCTGTTGATTTTCCGGATAAGATAGTTACACTAGTGCACAGAGGATCAAGGCTGCTGGAGTTCATAGGGACAAAAGCTGCGGACAAGACTCTAAATTGGTTGAAATCAAAGAATGTTAGAGTGAAATTTCAGCAATCAGTTGACTTGAGTGCATTCACTGATGGACAGAAGATGTATCAAACTTCAAATGGAGAAACGATTGAGGCTGATTGTCATTTCTTATGCATAGGGAAACCACTTGCTTCGGCATGGCTTAAGGAAACTGTGTTGAAGAATGACTTGGATGCTCAAGGAAGGATTAAAGTAGATGAAAAATTGAGAGTCAAGGGTCGGAGCAATATCTTTGCAATTGGAGATATTACAGATATTCCAGAAATCAAGCAAGGGTTTTTGGCACAGCAGCAGGCTGATGTGGTTGTCAAGAACTTGAAGGTGATGATAGAGGGAGGAAGAGAATGTAGATTGGATACTTACAAGCCACATTCAACAGTGGCAATAGTTTCACTTGGGAGGAAAGACGCAGTGGCACAGTTCCCATTCTTGACAATTATAGGAAGAATTCCTGGATTAATCAAATCTGGAGATTTGTTTGTTGGTAAAACAAGAAAACAAATGGGACTCAATCCTGATATTGTACATGCTTGA 1125 0.424 MGSADTETKQRIEMEKNGKRVVILGGGIAGSLVAKNLQFHAHVTLVDPKEYFEITWACLRSMVEPPFAERTVINHGDYLTNGDIVISHAVDVTETEVLTADGHRIGYDYLVIATGHADRVPKSRSDRLKQFREDNQKIKAAHSILIVGGGPTGVELAAEIAVDFPDKIVTLVHRGSRLLEFIGTKAADKTLNWLKSKNVRVKFQQSVDLSAFTDGQKMYQTSNGETIEADCHFLCIGKPLASAWLKETVLKNDLDAQGRIKVDEKLRVKGRSNIFAIGDITDIPEIKQGFLAQQQADVVVKNLKVMIEGGRECRLDTYKPHSTVAIVSLGRKDAVAQFPFLTIIGRIPGLIKSGDLFVGKTRKQMGLNPDIVHA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00970 374 SUPERFAMILY FAD/NAD(P)-binding domain 15 282 IPR036188 -
Cca04g00970 374 Pfam Pyridine nucleotide-disulphide oxidoreductase 19 287 IPR023753 GO:0016491
Cca04g00970 374 Gene3D - 17 359 - -
Cca04g00970 374 PANTHER APOPTOSIS-INDUCING FACTOR 1 18 371 - -
Cca04g00970 374 PANTHER NADH:UBIQUINONE REDUCTASE (NON-ELECTROGENIC)-RELATED 18 371 - -
Cca04g00970 374 PRINTS FAD-dependent pyridine nucleotide reductase signature 21 40 - -
Cca04g00970 374 PRINTS FAD-dependent pyridine nucleotide reductase signature 107 125 - -
Cca04g00970 374 PRINTS FAD-dependent pyridine nucleotide reductase signature 143 161 - -
Cca04g00970 374 PRINTS FAD-dependent pyridine nucleotide reductase signature 259 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00970 Cca-Chr4 10315948 10319000 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00970 12 287 EF-hand Containing Proteins AT4G05020 27.114 9.18e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00970 K22745 - gmx:100813439 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00970 04 10315948 10319000 Cca04g00970 04 10315948 10319000 ECH