Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00966 ATGATGATGATATCTAAGAACAAGCTGTTAACAGTGGTGTTTCTGATAGTCTTAGGTTTCAGCCTTGTGAACCCTTTTCCACTTGGCACGAGTGGTCGATGGATAGTGAAGGAAAGTGGTGAGAGAGTGAAGCTAGCATGTGTGAATTGGGTGTCGCATTTGGATGCTGTGGTGGCTGAGGGCTTAAGCGAACAACCTTTGGATGTGATATCAAAGAGAATCAAATCCATGGGATTCAACTGTGTGAGACTCACATGGCCAATTTTGTTGCTCACCAATCACTCTATTGCTTCTCTCACTGTCACAAACTCTTTCCAAAATCTTGGGTTGCTTCAAGCCATGGATGGAGTCCAAGCCATGAACCCCTCCATCATCGATCTTCCACTCATCAAAGCTTACCAGGAAGTGGTGAAAAGTTTGGGAGACAACAATGTAATGGTGATTTTGGACAATCATGTGAGCCAACCAGGGTGGTGTTGCAGTTACATGGACGGCAATGGGTTCTTTGGGGATCAGTATTTTGATCCAGACCTTTGGATTATGGGCCTTACCAAGATGGCCACCCTTTTCAAAGGGGTCACTAATGTGGTAGGCATGAGCCTCAGAAATGAGCTAAGAGGTCCCAAACAAAATCTCAATGACTGGTACAGGTACATGTCAAAAGGAGCAGAAGCAGTGCATGCAGCGAATCCAGATGTTCTTGTGATTCTATCTGGCATAAATTTCGACACTGATCTATCATTCATTAGAAACGAGGGAGTGAAACTGAGCTTCAGTGGAAAACTAGTGTTTGAGGTGCACTGGTACAGCTTCAGTGATGGTCAAGCATGGGCCTCAGGGAACCCAAACCAGGTGTGTGGGGAAGTGACAGGGAGTGTGATGAGTAGGGCAGGTTTCTTGTTGGACCAAGGGTGGCCCTTGTTTGTTAGTGAGTTTGGGTTGGACTTGAGAGGCACAAGTGTGAATGACAATAGGTATTTCAGCTGCTTCATGGCACTTGTGGCCCAGCTTGACTTGGATTGGGCCTTGTGGACACTGGGTGGGAGCTATTACATTAGACAAGGAGTTGTTAGAATGATTGAGTATTTTGGTGTTCTCAGTTCGGATTGGACTCAGGTTAGGAACACAAGCTTCTTGCAGAGGATCTCAGCTATTCAACTTCCTTTTCGAGGGCCAGGACTATCAGAAGCTGAACCATACAAAGTGATTTTTCACCCATTAACTGGTCTTTGTATCTTAAGAAAGTCACTGATTCATCCGTTGAGTTTGGGACCTTGTTCTAGTTCTGATGGATGGGAATACAGTGACCAGAAGATTCTATCAATAAAGGGTACCTATTTCTGTTTACAAGCAGAGGGAGAAGGGAAGCAAGCAAAACTTGGAAATACATGTTCAGGTTCCAATTCAATATGGGAAATGATCTCTGATTCAAAGATGCACCTCTCAAGTCAAATCAACAATGCTTCTGATGTGTGCCTTGATGTAGACACCAAGAACATCATTGTCACCAACCCTTGCAAATGCCTGAGCAAAGATAACACGTGCGACCCCGGAAGCCAATGGTTCAAACTCGTTGACAGCACGAGGAAATCAACCTCAACATCATCTATAGAATCGGTGTTTAGTTTCATGGAAAAAGAAGCTTCAGGAAACCATTGA 1659 0.4448 MMMISKNKLLTVVFLIVLGFSLVNPFPLGTSGRWIVKESGERVKLACVNWVSHLDAVVAEGLSEQPLDVISKRIKSMGFNCVRLTWPILLLTNHSIASLTVTNSFQNLGLLQAMDGVQAMNPSIIDLPLIKAYQEVVKSLGDNNVMVILDNHVSQPGWCCSYMDGNGFFGDQYFDPDLWIMGLTKMATLFKGVTNVVGMSLRNELRGPKQNLNDWYRYMSKGAEAVHAANPDVLVILSGINFDTDLSFIRNEGVKLSFSGKLVFEVHWYSFSDGQAWASGNPNQVCGEVTGSVMSRAGFLLDQGWPLFVSEFGLDLRGTSVNDNRYFSCFMALVAQLDLDWALWTLGGSYYIRQGVVRMIEYFGVLSSDWTQVRNTSFLQRISAIQLPFRGPGLSEAEPYKVIFHPLTGLCILRKSLIHPLSLGPCSSSDGWEYSDQKILSIKGTYFCLQAEGEGKQAKLGNTCSGSNSIWEMISDSKMHLSSQINNASDVCLDVDTKNIIVTNPCKCLSKDNTCDPGSQWFKLVDSTRKSTSTSSIESVFSFMEKEASGNH 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00966 552 PANTHER GLYCOSIDE HYDROLASE FAMILY 5 PROTEIN 9 540 - -
Cca04g00966 552 Pfam Cellulase (glycosyl hydrolase family 5) 67 347 IPR001547 GO:0004553|GO:0071704
Cca04g00966 552 CDD RICIN 400 513 IPR000772 -
Cca04g00966 552 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 9 540 - -
Cca04g00966 552 Gene3D Glycosidases 27 386 - -
Cca04g00966 552 SUPERFAMILY Ricin B-like lectins 398 524 IPR035992 -
Cca04g00966 552 SUPERFAMILY (Trans)glycosidases 27 375 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00966 Cca-Chr4 10270266 10275937 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00966 26 544 Glycoside Hydrolase AT1G13130 59.273 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00966 - - gmx:100816102 903.279