Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00961 ATGGGTGTGCCTGCGTTCTATAGATGGTTGGTTGAGAAATATCCGAAGGTGGTGCAAGACGTGGACCCCACCATGCAAAACCTTTCACTCAATTTTGATAACTTGTATCTTGACATGAACGCCATCATCCACCCTTGCTTTCACCCTGATGATCATGCCAACATTGTTCCTCCAAGAACGTTCGAAGATGTGTTCAAGAATGTGTTTGACTACGTTGATCGGCTTGTTGATTCTGTTAGGCCTGGGAAGCTCCTTTACATGGCTATTGACGGAGTTGCCCCACGTGCGAAAATGAACCAACAAAGATCAAGGCGTTTTCAAGCTGCTAAAGACAATGAAATTCAAGAAGCTGAGGAGGAGAGATTGAAGAAACAATTCCAAATGGAAGGGAAGGAAGTTCTTCCTAAACAAGAATCTGAAGTGTCAGATTCAAATATTATAACACCGGGCACTGAGTTCATGCATGAACTCTCAAATGCCATTAAAAGCTATATCTCTACAAGGATAAGCAGCAACTCGTTATGGAGGAATATTATGGTAATTCTCTCTGATGCTAATGTTCCCGGGGAAGGGGAACATAAGATTATGCAATTCATTCGCAAACAGCGTAGTCTAGAGGAATATGATCCAAATACCAGCCACTGCATATATGGCAACGATGCTGATCTCATAATGCTTGCAATGGCAACTCATGAGCCCCACTTTTCAATATTAAGAGAGGATGTCTCTCCGCAGCAGCAACACCAAAAAGATGCTACCAAGCCTTTCAAGTTTTTGCATATTTGGTTATTGAGGGAGTATCTTGAGTTAGACATGAAGATAGAAGATCCTCCCAAAAATTGCAGCATTGAGTTGGAGAGGATAATTGATGACTTCATCTTCATGTGCTTTTTTGCTGGAAATGATTTTCTGCCGCACATGCCATCTTTGGAAGTTCATGAGGGGGCTATTGATTTGCTAATGACTGTTTACAAGAAAGAATTCAATAAACTTGGAGGATATCTTGTGGACATGAGCAGGATTGGAGAGAAAAATGCTGCCTTTATGAAGCTATCAAGAGTTGAAAAATTTATACTTATGGTTGGTTCTTATGAAGAGAAAATTTTTAAGAAAAGATCTGAAATACGAGAACGAAAAGTGCGAAGGCTTATTCAAGATTATGAGGAAGCTAAGCAGGAAGAAAATAATGCAAGATTCCACTCAGATCTTGACGATGAAAATACCTCTGATTGTACTCTTCTGATTAAGAAGGCACCAAATTCAAAATATTTGTCTGGCTTGGTCAATAATGTTTCAGCTACATGTGCCGAGATTGAGCAGAACACCAAGGATTTAAAAGATGAATTGAAGAAATGTATCAGAGAAAAATCTGACTTGTTTAAGAGTGGGGATTTCCTAATCGACAAGATAAAATTGGGAACACCTGGCTACAAAGAAAGATATTATAAAGAAAAGTTTTCTGTAGAGGGCCCTGCTGACATTGAGTGCAAAAAGAAAGAAATAGTCCAGAAGTACACGGAAGGATTGGTGTGGGTTCTTCAGTACTATTTTTCAGGAGTTGCTTCATGGACATGGTTTTATCCATTCCACTATGGTCCATTTGCTTCGGACTTAAAGGGTATGGGTCAGGTGAGAGTAAAATTTGAAAAAGGTGTCCCATTCTTACCATTTAATCAACTTTTAAGTGTTCTGCCCCCAGCAAGTGCTCATGCACTTCCAAAAGCCTATGCGCAATTGATGCTAGATGAGCAGTCCAGAATTCTTGACTTTTATCCTAAAGATTTTGAAGTCGACATCGAAGGAAAGCGCTTCTTGTGGCAGGGAGTCTGCAAGCTTCCATGGATAGATGATAAACGGCTTGTGGCTGAAACCAGAGAGCTCAAAAACGAATTATCAGAAAATGAAGCCATGAGAAATTCTGTCAAAGCTGATAGCTTGTTTGTTAGAAGCACTAGCAAATTAGCAGAGAAAGTTGGCTCTCTTTCTCTAACGAGCAAATTAGATACAAGAATAAGTGACGGCATCGGAGGTGTGGTGAGTCTTTGCCACGAGTTTGTTGAGAAGACCTGTTTGGGGATGGAAATTTTTGACAACAAAGAAGAACGAGTCTTATGTGTGTATTATGAGCTTCCCCCCAGTACTAATCACATTCCTCGCTTACTATCAGGTGTGAACCTTCCAGAGAAGAGCATCTCTGAAGGTGACATAATGGAAACAGAACTCTGGCATGAACGTCAGAAATATTTTAGTCGCTTTGAGAGGACGCAAAGTCAAGAGAAGTGGAGAAGTGAAAGCAAGAGTGGTGCTTCAAGGTTCTCCTCAAATGCAACTAGCCAACATGCAAAAAGCTTTTCATCAAATGCACCTCCCTTGATTTACAAAGAAGCTGGTGTTGGATGGGGGGGTTCAGGTAGAGGGAAAAGAATTGATTCGATGGCAAATGAGACAACACCCTTGTCTCCTTTTCATGAACAACATAAGGATGCAGGTTCTTATCAAGTCACTACTACAAGAGACACGAGACCACAGCACTTAGTGGATAAGTTTAGACATTTCAGAATATCAGAGTCTAATCATTCGCCGAGGCACGGTGGCAGTTCTCAATTTCAACCACACAATAATGCTGCTGGTTACATGAATAAGTCAACAAATGCTCCTAATTATCATCAAGGTTCACAATATGAGACACTGCCTTTTGGTCGGGGACAAGGTAGGGGTGTAGCTAGTAACAGAATCTCATTGCGGCCTCAATGGAGTGATGGAAAATCTAACCAAATGAAAGATCAAAGTCGTTGA 2796 0.4074 MGVPAFYRWLVEKYPKVVQDVDPTMQNLSLNFDNLYLDMNAIIHPCFHPDDHANIVPPRTFEDVFKNVFDYVDRLVDSVRPGKLLYMAIDGVAPRAKMNQQRSRRFQAAKDNEIQEAEEERLKKQFQMEGKEVLPKQESEVSDSNIITPGTEFMHELSNAIKSYISTRISSNSLWRNIMVILSDANVPGEGEHKIMQFIRKQRSLEEYDPNTSHCIYGNDADLIMLAMATHEPHFSILREDVSPQQQHQKDATKPFKFLHIWLLREYLELDMKIEDPPKNCSIELERIIDDFIFMCFFAGNDFLPHMPSLEVHEGAIDLLMTVYKKEFNKLGGYLVDMSRIGEKNAAFMKLSRVEKFILMVGSYEEKIFKKRSEIRERKVRRLIQDYEEAKQEENNARFHSDLDDENTSDCTLLIKKAPNSKYLSGLVNNVSATCAEIEQNTKDLKDELKKCIREKSDLFKSGDFLIDKIKLGTPGYKERYYKEKFSVEGPADIECKKKEIVQKYTEGLVWVLQYYFSGVASWTWFYPFHYGPFASDLKGMGQVRVKFEKGVPFLPFNQLLSVLPPASAHALPKAYAQLMLDEQSRILDFYPKDFEVDIEGKRFLWQGVCKLPWIDDKRLVAETRELKNELSENEAMRNSVKADSLFVRSTSKLAEKVGSLSLTSKLDTRISDGIGGVVSLCHEFVEKTCLGMEIFDNKEERVLCVYYELPPSTNHIPRLLSGVNLPEKSISEGDIMETELWHERQKYFSRFERTQSQEKWRSESKSGASRFSSNATSQHAKSFSSNAPPLIYKEAGVGWGGSGRGKRIDSMANETTPLSPFHEQHKDAGSYQVTTTRDTRPQHLVDKFRHFRISESNHSPRHGGSSQFQPHNNAAGYMNKSTNAPNYHQGSQYETLPFGRGQGRGVASNRISLRPQWSDGKSNQMKDQSR 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00961 931 MobiDBLite consensus disorder prediction 767 785 - -
Cca04g00961 931 PANTHER 5'->3' EXORIBONUCLEASE 1 772 IPR027073 -
Cca04g00961 931 MobiDBLite consensus disorder prediction 856 931 - -
Cca04g00961 931 Gene3D - 134 332 - -
Cca04g00961 931 Gene3D - 1 133 - -
Cca04g00961 931 PIRSF Exonuclease_Xrn2 243 930 IPR017151 GO:0004534|GO:0005634|GO:0006139
Cca04g00961 931 PIRSF Exonuclease_Xrn2 1 252 IPR017151 GO:0004534|GO:0005634|GO:0006139
Cca04g00961 931 Coils Coil 373 397 - -
Cca04g00961 931 MobiDBLite consensus disorder prediction 859 897 - -
Cca04g00961 931 MobiDBLite consensus disorder prediction 759 785 - -
Cca04g00961 931 Gene3D - 545 641 - -
Cca04g00961 931 PANTHER OS11G0157000 PROTEIN 1 772 - -
Cca04g00961 931 Pfam Xrn1 helical domain 283 736 IPR041412 -
Cca04g00961 931 Coils Coil 428 455 - -
Cca04g00961 931 MobiDBLite consensus disorder prediction 910 931 - -
Cca04g00961 931 Pfam XRN 5'-3' exonuclease N-terminus 1 241 IPR004859 GO:0003676|GO:0004527
Cca04g00961 931 MobiDBLite consensus disorder prediction 815 837 - -
Cca04g00961 931 CDD PIN_XRN1-2-like 35 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00961 Cca-Chr4 10225423 10232093 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00961 - - gsj:114379404 1419.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00961 04 10225423 10232093 Cca04g00961 04 10225423 10232093 ECH