Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00951 ATGGCTAGTGTCTCACAGCTGATCTCAGCGGTCGAAAGAAGGCTTGCGGGGAAGGTGGCTCTTGTGACCGGTGGTGCAAGCGGCATAGGTGAAGCCACTGCAAGACTCTTCTCGAAGCACGGAGCAAACGTTGTGATAGCTGATATTCAAGACAATCTGGGCCTCTCTCTTTGCAAACACTTAGAATCCGCTTCCTATGTCCACTGCGACGTGACAAACGAGAACGACGTCGAAAACGCCGTGAACGCCGCCGTTTCGGAGCACGGCAAACTCGACATCATGGTGAACAACGCGGGCATAAGCGGCCCGATCAAAGCCAGCATCCTGGACAACACAAAGTCAGAGTTCGAGGCGGTGATAAACATCAACCTAGTCGGCGTGTTTCTCGGGACGAAGCACGCCGCACGTGTGATGGTCCCTGCGCGAAGAGGAAGCATAATCAACACCGCAAGCGTGTGCGGAAGCATAGGTGGCGTGGCCTCGCACGCGTACACGAGTTCGAAGCACGCGGTGGTGGGGCTGACGAGGAACACCGCGGTGGAGCTTGGACAGTTCGGTGTGAGGGTGAATTGCGTGTCGCCCTATCTGGTTGCCACGCCCTTGACTATGGATTTCTTCAAGCTTGATGAGGAGGGAGCTCTTGGCGTTTACTCTAACCTGAAGGATGCTGTCCTTGAACCCAAGGATGTGGCAGAAGCTGCGCTTTACTTGGGGAGTGACGCCTCCAAGTATGTTAGTGGCCACAATCTTGTGGTTGATGGAGGCTTTACTATTGTCAATACTGGGCTTTGTGTCCTTGGCCAATCTGTTGTGTGA 816 0.5441 MASVSQLISAVERRLAGKVALVTGGASGIGEATARLFSKHGANVVIADIQDNLGLSLCKHLESASYVHCDVTNENDVENAVNAAVSEHGKLDIMVNNAGISGPIKASILDNTKSEFEAVININLVGVFLGTKHAARVMVPARRGSIINTASVCGSIGGVASHAYTSSKHAVVGLTRNTAVELGQFGVRVNCVSPYLVATPLTMDFFKLDEEGALGVYSNLKDAVLEPKDVAEAALYLGSDASKYVSGHNLVVDGGFTIVNTGLCVLGQSVV 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00951 271 Gene3D - 5 266 - -
Cca04g00951 271 PANTHER MOMILACTONE A SYNTHASE 8 262 - -
Cca04g00951 271 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Cca04g00951 271 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Cca04g00951 271 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Cca04g00951 271 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Cca04g00951 271 PRINTS Glucose/ribitol dehydrogenase family signature 185 202 IPR002347 -
Cca04g00951 271 PRINTS Glucose/ribitol dehydrogenase family signature 220 240 IPR002347 -
Cca04g00951 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Cca04g00951 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Cca04g00951 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Cca04g00951 271 Pfam Enoyl-(Acyl carrier protein) reductase 24 257 - -
Cca04g00951 271 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 151 179 IPR020904 GO:0016491
Cca04g00951 271 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 8 262 - -
Cca04g00951 271 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 259 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00951 Cca-Chr4 10077091 10078522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00951 15 258 Acyl Lipid Metabolism Gene Families AT1G63380 34.231 2.98e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00951 - - gmx:100782627 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00951 04 10077091 10078522 Cca04g00951 04 10077091 10078522 ECH