Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00941 ATGACTCGCGTCTTGGTTCAGAGGGGTTCCTCCTCCAACCCCAACGCTAACAGGTctgccgctgccgctgctgctgccgcctccgcctccgccTCTTCTTCCAATTCCTCAGCGCGGCCTGAGCCGCCGCCGGAGATTGCTGAGGAGGTTGTTGTTGCCGTGTCCGATGAGGTTTTGGAGAGCGGTGAAAAGGGGAAGAATGAGGAGGTTTTGGCTGCTGCTGCTGGTGGTGGTGTTCATTTTGAGCAGGGTGGTGGTGATGGTTCGTGTGATGATGACGTGGCTGCTGCTGCTGCTGCTGCTGTGGAGAGTGATGTGAGGGAGGAGATTGTGAGTGGGCTGAGAGTTGGCGAGAGACTTGTTTCGGAGAGTGAGGGTTCGAGTGGGGATGCTTTTTCCCTCCCTGTTGGTGGTGCTGGTTCTTGCCCCCCACCGCCTCCGGTGCCGCCTCCCAAGCCTTCTGTGGCGGGGAACTTGAACCCGAGGAGGAGTGTGGCCTGGGGTTTGAATTCCGGCTCTGTGGGATCCTCGAGGAGGACTGCGTGGCCTCCGGCGAGGACTTCACCTGCTGGGTCTAGGCCGTCTTCCCCCAGGTCGCATAATGAAAGTGAGGGGTACAATAGTGCTGATGAACAGAAGCCTTGCCTGGTTTCCTCTTATGATGATTTTGAAAGGGAGCGGCAGTTTGAAATTGATATCAGAAGGGCAAAGGGTTATGAAGTAAAAAAAATGATGGAGGATGGGAATTGTCTTTTCAGAGCAGTTGCAGATCAGGTGTATGGGGACTCAGAATTGTATGATTTGGTCAGACAGATGTGTATAGATTATATGGAGCAAGAGAGAGATCACTTTTCACAGTTTATAACTGAAGGCTTCACATCTTACTGCAAGAGAAAAAGAAGAGATAAGGTCTATGGAAACAATGTTGAGATCCAAGCCATGTGTGAAATGTATAATCGTCCAATTCACATATACTCTTACACCACTGAACCTATCAATATCTTCCATGGAAGCTACAATACTGACACACCACCAATTCGATTGAGTTATCATCATGGGAATCATTACAACTCTCTTGTTGACCCACGACGCTTGACAATTGGTGCTGGTCTTGGGTTCAGCAGTCTTCGTGGAACAAATGTTGACAAAGATCAAGTTAAGGCTGCTATTAAAGCTCAACAAGACCAACAGATCAATAATGCACTTTTAGCTGAGGGTCGGTTTTACTCGGATCTTGAGCTGACAGAGAAGGAAATTGAACGCATGGTGATTGAAGTATCTAGAGCTGAGTACCTTGCAGATAGTAGAGTATTTAAGCAACCGCTTGGCGATAGAGAGTCCTCAACCTCAAACGCTGAACCATCATCTTCTGGAGCATCAGGCAGTGATAATGGGAAAGAGCATCTTAGCAGTGGTATGCAGATCTTATTAACAATGGGATTCAGTTACATCCAAGCGATCGAGGCTTACAGCTTATTTGGGGACGATGTTGATTCTATGGTTTGTTACCTCTTAGAAACTGCCAGTACCAGCAGACGTAAAGGCAAGGCTACTGAATGA 1560 0.4686 MTRVLVQRGSSSNPNANRSAAAAAAAASASASSSNSSARPEPPPEIAEEVVVAVSDEVLESGEKGKNEEVLAAAAGGGVHFEQGGGDGSCDDDVAAAAAAAVESDVREEIVSGLRVGERLVSESEGSSGDAFSLPVGGAGSCPPPPPVPPPKPSVAGNLNPRRSVAWGLNSGSVGSSRRTAWPPARTSPAGSRPSSPRSHNESEGYNSADEQKPCLVSSYDDFERERQFEIDIRRAKGYEVKKMMEDGNCLFRAVADQVYGDSELYDLVRQMCIDYMEQERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAMCEMYNRPIHIYSYTTEPINIFHGSYNTDTPPIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRGTNVDKDQVKAAIKAQQDQQINNALLAEGRFYSDLELTEKEIERMVIEVSRAEYLADSRVFKQPLGDRESSTSNAEPSSSGASGSDNGKEHLSSGMQILLTMGFSYIQAIEAYSLFGDDVDSMVCYLLETASTSRRKGKATE 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00941 519 MobiDBLite consensus disorder prediction 1 47 - -
Cca04g00941 519 Pfam OTU-like cysteine protease 247 356 IPR003323 -
Cca04g00941 519 Gene3D - 221 372 - -
Cca04g00941 519 MobiDBLite consensus disorder prediction 164 203 - -
Cca04g00941 519 ProSiteProfiles OTU domain profile. 239 362 IPR003323 -
Cca04g00941 519 PANTHER OTU DOMAIN CONTAINING PROTEIN 132 468 - -
Cca04g00941 519 PANTHER OTU DOMAIN-CONTAINING PROTEIN 5-LIKE ISOFORM X1 132 468 - -
Cca04g00941 519 MobiDBLite consensus disorder prediction 120 211 - -
Cca04g00941 519 MobiDBLite consensus disorder prediction 1 19 - -
Cca04g00941 519 MobiDBLite consensus disorder prediction 139 156 - -
Cca04g00941 519 SUPERFAMILY Cysteine proteinases 226 362 IPR038765 -
Cca04g00941 519 MobiDBLite consensus disorder prediction 26 40 - -
Cca04g00941 519 MobiDBLite consensus disorder prediction 442 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00941 Cca-Chr4 9995100 10002285 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00941 K12655 - gmx:100780250 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00941 04 9995100 10002285 Cca04g00941 04 9995100 10002285 ECH