Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00938 ATGGCGATCTTCTACGCTTTGGTGGCCAGAGGCACCGTGGTGCTGGCGGAGTTCAGCGCCGTCACCGGAAACACCGGCGCCGTGGCTCGCCGCATCCTCGAGAAGCTCCCGGCGGAGTCCGACTCCAGGCTCTGCTTCTCTCAGGATCGCTACATCTTTCACATACTCCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGAACTACGGTAGAGTTGCCAATTATGCTCCTGCTTATGCAATGAATGACGAGTTTTCAAGGGTTTTGCATCAGCAAATGGAATTCTTTTCTAGTAATCCTAGTGCTGATACCCTCAATCGTGTGAGGGGTGAAGTTGGTGAGATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGATCGGATCGAGCTTCTTGTTGATAAGACAGCAACAATGCAAGACAGTACATTTCACTTTAGGAAACAGTCGAAGCGCCTTAGAAGAGCTCTTTGGATGAAAAATTTTAAACTCCTGGCCTTATTGACAGTCTTGATTGTTATCATTCTTTATTTAATAATCGCTGCTTGTTGTGGAGGCATCACTCTACCGTCCTGCAGATCCTAA 663 0.4721 MAIFYALVARGTVVLAEFSAVTGNTGAVARRILEKLPAESDSRLCFSQDRYIFHILRSDGITYVCMANDTFGRRIPFSYLEDIQMRFMKNYGRVANYAPAYAMNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVGEIRTIMVDNIEKILERGDRIELLVDKTATMQDSTFHFRKQSKRLRRALWMKNFKLLALLTVLIVIILYLIIAACCGGITLPSCRS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00938 220 PRINTS Synaptobrevin signature 131 150 IPR001388 GO:0016021|GO:0016192
Cca04g00938 220 PRINTS Synaptobrevin signature 151 170 IPR001388 GO:0016021|GO:0016192
Cca04g00938 220 PRINTS Synaptobrevin signature 187 206 IPR001388 GO:0016021|GO:0016192
Cca04g00938 220 Pfam Synaptobrevin 124 211 IPR042855 -
Cca04g00938 220 ProSitePatterns Synaptobrevin signature. 144 163 IPR001388 GO:0016021|GO:0016192
Cca04g00938 220 SMART Longin_2 28 110 IPR010908 -
Cca04g00938 220 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Cca04g00938 220 CDD R-SNARE 125 184 - -
Cca04g00938 220 SUPERFAMILY SNARE-like 3 118 IPR011012 -
Cca04g00938 220 Gene3D - 125 209 - -
Cca04g00938 220 Gene3D Longin domain 1 124 - -
Cca04g00938 220 PANTHER LONGIN-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 219 - -
Cca04g00938 220 CDD Longin 4 118 IPR010908 -
Cca04g00938 220 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Cca04g00938 220 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 126 186 IPR042855 -
Cca04g00938 220 PANTHER SNARE PROTEINS 1 219 - -
Cca04g00938 220 SUPERFAMILY SNARE fusion complex 121 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00938 Cca-Chr4 9977942 9981752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00938 1 220 Miscellaneous Gene Families AT5G22360 85.973 7.89e-144 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00938 K08515 - gmx:100780787 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00938 04 9977942 9981752 Cca04g00938 04 9977942 9981752 ECH