Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00923 ATGAGAATATTGTTGTGTTACATATGTTCCATTCGTGGTTATCCTGAGTCAATGTTCACATTGGAGCGAAAACAAATTGTTGAAGGAGTTGAGTATCGTAGGTACTATGGAACATTGGTTACGACTGATGTTGGGAACCTTGTTTTATTGGGAAAATTTGCACCAAATGACTATGATGCTCAAGAGGATGTGTCTGCTTCATTGATTCGTCGACTACTAGCAGCAACGGGTAAAAAGATTTGTGACTACAACTACTATAATGTTCAAATCCTAGAGGAACAACTTGAAAAAACAATGAATCAAAATTTGGAGCTGGAGATGGAGAAACCATTTCTTAAACCCTTTGCTCTTGctctctctctctctctctctctctctctctctctctctctctctctctctcGAACAACATCGTTTTCTCCGCTTTCAACACCCACCATCTTCTCTTCTCTGCTAATCATGGCAACCTTGTCAACTGTGAATCTCTCTCCCCATTGCATGTTTCAAACTCCAAGCAAAAATCAATCCACTATTTCCACCACAGTGAAATGCCCTTCTTCTCTGGGTTCTGTGAGGAGCGTTTCCAGATCTTTTGGCCTGAAGTCATCCTCTTCATTCAGAGTCACTGCCATGGCGTCTTACAAGGTTAAGCTGATCGGCCCGGATGGAAAAGAGAACGAGTTTGAAGCTGCTGACGACACTTACATCTTGGATGCAGCAGAGAATGCTGGAATTGAACTTCCTTACTCTTGCCGTGCTGGAGCATGCTCCACTTGTGCTGGGAAGATTGTTGCTGGTGCAGTGGATCAGTCTGATGGCTCATTCCTTGATGACAACCAACTGAAGGAAGGATTTCTGCTTACCTGTGTCTCATATCCAACTGCAGACTGTGTTATTGAAACTCACAAGGAAGGAGATCTCTACTGA 927 0.4045 MRILLCYICSIRGYPESMFTLERKQIVEGVEYRRYYGTLVTTDVGNLVLLGKFAPNDYDAQEDVSASLIRRLLAATGKKICDYNYYNVQILEEQLEKTMNQNLELEMEKPFLKPFALALSLSLSLSLSLSLSLSRTTSFSPLSTPTIFSSLLIMATLSTVNLSPHCMFQTPSKNQSTISTTVKCPSSLGSVRSVSRSFGLKSSSSFRVTAMASYKVKLIGPDGKENEFEAADDTYILDAAENAGIELPYSCRAGACSTCAGKIVAGAVDQSDGSFLDDNQLKEGFLLTCVSYPTADCVIETHKEGDLY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00923 308 Gene3D - 211 308 IPR012675 -
Cca04g00923 308 Pfam 2Fe-2S iron-sulfur cluster binding domain 221 294 IPR001041 GO:0051536
Cca04g00923 308 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 214 305 IPR001041 GO:0051536
Cca04g00923 308 CDD fer2 216 300 IPR001041 GO:0051536
Cca04g00923 308 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 251 259 IPR006058 GO:0051537
Cca04g00923 308 PANTHER FERREDOXIN 158 308 - -
Cca04g00923 308 Coils Coil 88 108 - -
Cca04g00923 308 SUPERFAMILY 2Fe-2S ferredoxin-like 209 304 IPR036010 GO:0051536
Cca04g00923 308 PANTHER FERREDOXIN 158 308 - -
Cca04g00923 308 TIGRFAM fdx_plant: ferredoxin [2Fe-2S] 212 308 IPR010241 GO:0009055|GO:0022900|GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00923 Cca-Chr4 9835232 9847181 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00923 K02639 - gmx:100785611 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00923 04 9835232 9847181 Cca04g00923 04 9835232 9847181 ECH