Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00919 ATGATGGACCGTCTTCCTGTTGAAGTGATTGGGAACATTCTTTCTCGTTTGAGGGCTGCAAGAGATGTGGTGATAGCCTCTGCAACGTGCAGGAAATGGCGACAAGCGTGCTGCAAGCACATTCAGACACTCTCCTTCAGCTCCAAAGATTGGCCAATGTACCGAGATTTGACAACTACCCGGCTCGAGATTTTGATCACACAAACCATTTTTCAGACCTCAGGGTTGCAGGCCCTCTCCATTTTGATGGAAGATGTGGATGAATTCTCGGCCTCCACCGTTACCGCTTGGCTCCTGTACACCAGGGAGACTCTGAGGCAATTGCATTATAATGTCAAGACTATGCCTAATGTTAACATTCTTGAAATATGTGGCAGGCACAAGCTGGAGATACTAGATCTGGCTCATAATTCCATTGTGGGGGTTGAGCCTAATTATCAGCGATTCCCTTGTTTGAAATCTCTTTCCCTGAGTTATGTTAGTATATCCGCGTTGGATCTGAATCTTTTGGTGTCTGCGTGTCCGAAGATTGAAGCCTTGGAGCTTGTCAATCCTGAGATTGCAATGTCTGATGCTCAGGTGACTGTTGAGTTGAGTAGTTCAACGCTGAAGAGTGTGTATGTGGAAGCAATCAGTTTGGACAAGTTTATATTGGAGGCTGATGGGCTTGAGTCCTTGCACTTGAAAGATTGTGCCCTCGAGTTTTTTGAACTCATTGGGAAGGGGACCTTGAAGCATTTTAAGATTGATGATGTTAGTGTTATACATCTTGATATTGGTGAGACAGTTGAGGATCTTGAGACTGTGGATATCAGCAACTTCACAATTATATGGCCAAAGTTTTACCAGATGATTTCAAGATCTTCAAATTTAAAGAGGCTTCGGCTTTGGGATGTGATGTTTGATGATGAGGATGAGGTTGTGGATTTGGAAACAATTGCGACTTGCTTTCCCACCTTGAGCCATTTATCTCTGAGTTATGATGTGAGAGATGGAGTGCTTCACTATGGTTTACAAGGCTCTGCCTATCTGGAGAATGTTGCTGTCTTGGAGCTTGGCTGGACTGTGATAAATGATCTTTTCTCCCACTGGGTTGAGGGGCTGCTTAAGCGATGTCCCAATCTCAAGAAGTTGGTGATTCATGGGATTGTTTCTGAGGCTAAGTCTCATGAAGAATGCCAGATGTTAGCCAATTTCACCACATCCATGGTTGAGCTGATGAGGAGATACACACATGTAGATCCATATTTCAAGTATGAATAG 1263 0.4402 MMDRLPVEVIGNILSRLRAARDVVIASATCRKWRQACCKHIQTLSFSSKDWPMYRDLTTTRLEILITQTIFQTSGLQALSILMEDVDEFSASTVTAWLLYTRETLRQLHYNVKTMPNVNILEICGRHKLEILDLAHNSIVGVEPNYQRFPCLKSLSLSYVSISALDLNLLVSACPKIEALELVNPEIAMSDAQVTVELSSSTLKSVYVEAISLDKFILEADGLESLHLKDCALEFFELIGKGTLKHFKIDDVSVIHLDIGETVEDLETVDISNFTIIWPKFYQMISRSSNLKRLRLWDVMFDDEDEVVDLETIATCFPTLSHLSLSYDVRDGVLHYGLQGSAYLENVAVLELGWTVINDLFSHWVEGLLKRCPNLKKLVIHGIVSEAKSHEECQMLANFTTSMVELMRRYTHVDPYFKYE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00919 420 PANTHER F-BOX PROTEIN-LIKE 2 418 - -
Cca04g00919 420 SUPERFAMILY RNI-like 74 383 - -
Cca04g00919 420 PANTHER - 2 418 - -
Cca04g00919 420 Gene3D - 3 42 - -
Cca04g00919 420 Gene3D Ribonuclease Inhibitor 114 408 IPR032675 -
Cca04g00919 420 SUPERFAMILY F-box domain 1 52 IPR036047 GO:0005515
Cca04g00919 420 SMART fbox_2 5 48 IPR001810 GO:0005515
Cca04g00919 420 Pfam F-box-like 3 39 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00919 Cca-Chr4 9793075 9795082 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00919 - - gmx:100786847 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00919 04 9793075 9795082 Cca04g00919 04 9793075 9795082 ECH