Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00913 ATGAAGGTCCAAGAAACGAGGTCGCATGTTCATGCACCTGGGGAAGAAGAGAAGGTGATGACAAGGAAGCAGAAGGCAGAGTCCAAGGCACATGAAGTGGAGCATTCTCCGAAGAAGGCCAAGGTGGAAAACGAAGATGGTCACATCAACGGAAAATCTGCAACTGATGTTACAGAAGAATATAATGAGTTTTGCAAAGCCACAAACGAGCACCTGCCTTTGGAACAAATGAAAGAGATTCTGGAGGCTAATGGCCTTGATTCTTCTGGCTCTGATCTTGAAATTACACGAAGATGCCAAGACTTGCTGTTTTATGGTGCATTGGACAAATGCTCGGTTTGCAACGGGAGTTTAGAGTTTGATGGCAGACGTTATGTTTGCAGAGGTTTCTACAGTGAGTGGGCTAGTTGCATTTTCAGCACCAGAAACCCTCCAAGGAAACAGGAACCCATTAAGTTACCTGATTCTGTTCAGAACTCTCTGGCTTCAGATTTGCTAAAGAAATATCAGGATCCGAGTCACAGACCACACAGGGACCTAGGCTTAGCTGAAAAACCCTTTACTGGAATGATGATATCTCTGATGGGTCGTCTTACTCGGACACACCATTATTGGAAAACAACTATTGAAAAGCATGGAGGGAAGGTGGCAAACTCTATAATTGGGGCAACTTGTTTGGTGGCGTCACCTGCTGAGAGAGAACGTGGCGGCACATCCAAACTTGCAGAGGCCATGGAGAGGGGTATTCCAGTGGTTAGGGAAGCTTGGCTGATTGACAGCATTGAAAAGCAAGAACCACAGCCTTTGGAAGCTTATGACCTTGTCTCTGATCTTTCTGTTGACGGCAAGGGAATCCCCTGGGACAAACAAGATCCTGGGGAGGAGGCTATTGAATCGCTCTCAGCAGAACTCAAGCTTTATGGGAAGAGGGGGGTTTATAAAGATACCAAGTTGCAGGAACAAGGTGGAAAGATATTCGAAAGAGATGGGATATTATACAATTGTGCCTTCTCTGTTTGTGATCAAGGGAGACGACTGAATGACTACTGTGTCATGCAACTGATTGTTGTCCCAGAGAACCGTTTGAATCTCTACTTTAAGAAAGGGAGAGTTGGCGATGATCCAAATGCAGAGGAGCGATTAGAAGAGTGGGACAACGTGGACAGTGCTCTGAAAGAGTTTGCGAGACTCTTTGAGGAAATTACTGGAAATGAGTTCGAACCTTGGGAAAGAGAGAAGAAGTTCCAGAAGAAGCCATTGAAGTTTTACCCCATTGACATGGATGATGGAGTTGAAGTTAGACACGGAGCACTAGGTCTTCGGCAGCTGGGAATAGCAGTAACGCACAGTAAACTTGAGCCTTTGGTTGCAAACTTTATGAAGGTCTTGTGCAGCCAGGAGATATATAAGTATGCATTGATGGAGATGGGCTACGACTCTCCGGACCTTCCAATAGGAATGGTTACAAATCTTCATCTGAAAAGATGTGAGGACGTTCTCTTAGAATTCATAGACAAGGTGAAAGCATTGAAAGAGACTGGGCCCAAGGCTGAGGCTGTTTGGACTGATTTTAGCCAAAGATGGTTCACTCTGATGCACTCCACAAGACCTTTCAATTTTAGAGATTATCAAGAGATTGCAGATCATGCTGCTGCTGCCTTGGAGGGGGCGAGAGACATAACCCTCGCTTCTCACCTCATAGGTGATATGAGTGGCGCAACCATTGATGACCCATTATCAGAGACATACAAGAAATTGGGTTGCTCAGTTTCTCCCTTGGACAAAAGTTCAAATGATTACGAGATGATTGTGAAATACCTTGAAAAAACTTATGAGCCAGTCAAAGTTGGTGACATTGATTATGGGGTGTCAGTGGAAAACATTTTTGCGGTCCAAACAGGTGGTTGCCCTTCCTATGAAGACATAGTGAAACTGCCAAATAAAGTTCTTCTATGGTGTGGATCACGAAGCTCAAATCTTTTGAGGCACTTGCACAAGGGGTTCTTGCCAGCAATATGCTCACTACCGGTTCCCGGTTATATGTTTGGCAAAGCTATTGTCTGTTCCGACGCTGCAGCAGAGGCTGCAAGATATGGTTTTACTGCTGTGGACAGGCCAGAAGGGTTCTTGGTTTTGGCCATTGCTTCTCTAGGAAATGAGATTACTGAGTTGAAAAGCCCACCTGAGGATACATCGTCTTTGGAGGAAAAGAAGATTGGGGTGAAGGGACTGGGGAAGAAGAAAACAGATGAATCAGAGCATTTTGTTTGGAAAGATGATATTAAAGTTCCCTGCGGCAGACTAGTTGCTTCAGACCATCAAGATAGTCCCCTGGAATACAACGAGTATGCTGTCTACGAACCTAAGCAGGTACGTATAAGCTACATGGTCGAAGTGAAGTATGAAGAGACGGGTGCTGTGATCGACACAACTGAGTGA 2439 0.4506 MKVQETRSHVHAPGEEEKVMTRKQKAESKAHEVEHSPKKAKVENEDGHINGKSATDVTEEYNEFCKATNEHLPLEQMKEILEANGLDSSGSDLEITRRCQDLLFYGALDKCSVCNGSLEFDGRRYVCRGFYSEWASCIFSTRNPPRKQEPIKLPDSVQNSLASDLLKKYQDPSHRPHRDLGLAEKPFTGMMISLMGRLTRTHHYWKTTIEKHGGKVANSIIGATCLVASPAERERGGTSKLAEAMERGIPVVREAWLIDSIEKQEPQPLEAYDLVSDLSVDGKGIPWDKQDPGEEAIESLSAELKLYGKRGVYKDTKLQEQGGKIFERDGILYNCAFSVCDQGRRLNDYCVMQLIVVPENRLNLYFKKGRVGDDPNAEERLEEWDNVDSALKEFARLFEEITGNEFEPWEREKKFQKKPLKFYPIDMDDGVEVRHGALGLRQLGIAVTHSKLEPLVANFMKVLCSQEIYKYALMEMGYDSPDLPIGMVTNLHLKRCEDVLLEFIDKVKALKETGPKAEAVWTDFSQRWFTLMHSTRPFNFRDYQEIADHAAAALEGARDITLASHLIGDMSGATIDDPLSETYKKLGCSVSPLDKSSNDYEMIVKYLEKTYEPVKVGDIDYGVSVENIFAVQTGGCPSYEDIVKLPNKVLLWCGSRSSNLLRHLHKGFLPAICSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKSPPEDTSSLEEKKIGVKGLGKKKTDESEHFVWKDDIKVPCGRLVASDHQDSPLEYNEYAVYEPKQVRISYMVEVKYEETGAVIDTTE 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00913 812 SMART PADR1_2 95 148 IPR012982 -
Cca04g00913 812 SUPERFAMILY ADP-ribosylation 586 802 - -
Cca04g00913 812 Gene3D - 587 803 - -
Cca04g00913 812 MobiDBLite consensus disorder prediction 1 52 - -
Cca04g00913 812 Gene3D - 52 176 - -
Cca04g00913 812 CDD parp_like 449 800 - -
Cca04g00913 812 ProSiteProfiles PARP catalytic domain profile. 577 808 IPR012317 GO:0003950
Cca04g00913 812 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 449 585 IPR036616 GO:0003950
Cca04g00913 812 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 801 - -
Cca04g00913 812 PANTHER DNA LIGASE 1 801 - -
Cca04g00913 812 SUPERFAMILY BRCT domain 184 285 IPR036420 -
Cca04g00913 812 Pfam BRCA1 C Terminus (BRCT) domain 184 261 IPR001357 -
Cca04g00913 812 SMART BRCT_7 184 264 IPR001357 -
Cca04g00913 812 Gene3D BRCT domain 182 280 IPR036420 -
Cca04g00913 812 Pfam Poly(ADP-ribose) polymerase, regulatory domain 450 583 IPR004102 GO:0003950
Cca04g00913 812 Pfam Poly(ADP-ribose) polymerase catalytic domain 597 800 IPR012317 GO:0003950
Cca04g00913 812 SMART WGR_cls 333 416 IPR008893 -
Cca04g00913 812 CDD WGR_PARP1_like 323 429 - -
Cca04g00913 812 Pfam WGR domain 333 412 IPR008893 -
Cca04g00913 812 ProSiteProfiles PARP alpha-helical domain profile. 449 568 IPR004102 GO:0003950
Cca04g00913 812 ProSiteProfiles WGR domain profile. 322 422 IPR008893 -
Cca04g00913 812 CDD BRCT_PARP1 187 262 - -
Cca04g00913 812 ProSiteProfiles BRCT domain profile. 182 274 IPR001357 -
Cca04g00913 812 SUPERFAMILY WGR domain-like 298 427 IPR036930 -
Cca04g00913 812 Pfam PADR1 (NUC008) domain 97 147 IPR012982 -
Cca04g00913 812 Gene3D - 446 586 IPR036616 GO:0003950
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00913 Cca-Chr4 9695487 9700429 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00913 K10798 - gmx:100788978 1564.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00913 04 9695487 9700429 Cca04g00913 04 9695487 9700429 ECH