Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00885 ATGCTTTTGATAGTAAGACCCTGTTCTTCTTCCGTGAGTATTCATCATTTTCAGCCCAAGCCGCAGCGTAGCAGAAACGTCGTCGTTAGATGCTCCTTGAGCAGCGTGGAAGAGAAAAGAGGATTGGATTCGGAGCTGCAGGCTTCGGTGCCGTTCCCTCCGATCAGGGTGGCGAAGAGAGTGGTTCTGGTGAGGCACGGGCAGAGCACGTGGAACGCGGAAGGGAGGATCCAAGGAAGTTCCAATTTCTCGGTTCTCACGAAGAAGGGCGAGTCTCAGGCCGAGACTTCGCGCCAAATGCTCATCGACGATCACTTCGATGCATGCTTCGCTAGTCCTTTGGCTCGATCCAAGAGAACCGCTGAAATCATTTGGGGACCTCGCCAAGAGACCATCGTTCCCGACATTGACTTGAGGGAAATCGATTTGTACTCCTTTCAAGGTCTGTTGAAGCATGAAGGGAAAGCGAGATATGGTGCTGCTTACCGTGAGTGGCAGGTGGATGCTGCGAACTTCATGATTGATGGCCATTATCCTGTTAGAGAGTTGTGGGACCGTGCTAGAAGCTGCTGGACTAAAATCTTAGCTCATGATAGCAGGTCTGTTCTTGTGGTTGCTCACAATGCTGTTAATCAGGCTCTTGTTGCCACAGCAATTGGTTTGGGGGCAGAGTATTTCAGAACATTACTTCAGAGCAATTGTGGTGTTAGTGTGCTGGATTTCATCCCGAGACCTGAGGGTGGATCTCCACATATTTGCCTTAACCGCTTAAATCAGACCCCTGGTTCGCCTGTTGCTGGTGGGAAATCTGCAGGTAGAGAGACAAGTAGGCGATTTATACTTGTTTGTAGTGGATCAACACAAGGAAATACAGAGGATGGTTTTCCTTTTGCTGGTGATCAACCATTGAACATGCTTGGTGTCATACAGTCCCAGAAATCTGCAGAGCTACTTCTTGATTTGAAAGTGAATTCCATAGTTAGCAGTCCTAACAAAGCTTGTGTTGAGACAGCCGTGGCCATCTCCAAGGTGCAAGAAGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCTCGATATGTTGAGATGAAGCAGATGGGGAACCTTGATGTTGAAACTATCTTCAAACAAACCAACACGGATATATCCAATTTTCCACCATTTCAACCTGGGTGGTTAAATAGAATTGATGATGGGTTGAGAACAAAATTATGGGATCAATCTGGGAAAGCCTGGCGATCGCTATTGGATGAAATATCTGACGAATCTAGGCCAGAAGAAGTTGTAGTTGCAGTTGGTCATCCTGCAATCCACATAGCACTAATGGGGCACTGCCTTAATTTGACAAAAGAATGGTTGGGATCATTTCATCTTGATGCAGGGAGCGTGAGTGTTGTTGACTTCCCTGATGGACCTAAGGGAAAAGGTGTCATCAGGTGCATAAATTACACTGCACATTTGGGGAGATGGTCCATACCTATTACTAGATCAACAGAGGATGGTGAAGAGTTTTAA 1512 0.4702 MLLIVRPCSSSVSIHHFQPKPQRSRNVVVRCSLSSVEEKRGLDSELQASVPFPPIRVAKRVVLVRHGQSTWNAEGRIQGSSNFSVLTKKGESQAETSRQMLIDDHFDACFASPLARSKRTAEIIWGPRQETIVPDIDLREIDLYSFQGLLKHEGKARYGAAYREWQVDAANFMIDGHYPVRELWDRARSCWTKILAHDSRSVLVVAHNAVNQALVATAIGLGAEYFRTLLQSNCGVSVLDFIPRPEGGSPHICLNRLNQTPGSPVAGGKSAGRETSRRFILVCSGSTQGNTEDGFPFAGDQPLNMLGVIQSQKSAELLLDLKVNSIVSSPNKACVETAVAISKVQEAADCLGADCVPRYVEMKQMGNLDVETIFKQTNTDISNFPPFQPGWLNRIDDGLRTKLWDQSGKAWRSLLDEISDESRPEEVVVAVGHPAIHIALMGHCLNLTKEWLGSFHLDAGSVSVVDFPDGPKGKGVIRCINYTAHLGRWSIPITRSTEDGEEF 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00885 503 SUPERFAMILY Phosphoglycerate mutase-like 277 491 IPR029033 -
Cca04g00885 503 CDD HP_PGM_like 60 241 IPR013078 -
Cca04g00885 503 CDD HP_PGM_like 278 478 IPR013078 -
Cca04g00885 503 Gene3D - 269 490 IPR029033 -
Cca04g00885 503 Pfam Histidine phosphatase superfamily (branch 1) 280 470 IPR013078 -
Cca04g00885 503 Pfam Histidine phosphatase superfamily (branch 1) 61 242 IPR013078 -
Cca04g00885 503 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 23 244 - -
Cca04g00885 503 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 420 503 - -
Cca04g00885 503 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 63 72 IPR001345 GO:0003824
Cca04g00885 503 SUPERFAMILY Phosphoglycerate mutase-like 59 255 IPR029033 -
Cca04g00885 503 SMART PGAM_5 60 214 IPR013078 -
Cca04g00885 503 SMART PGAM_5 278 440 IPR013078 -
Cca04g00885 503 Gene3D - 59 245 IPR029033 -
Cca04g00885 503 PANTHER 2-CARBOXY-D-ARABINITOL-1-PHOSPHATASE-RELATED 23 244 - -
Cca04g00885 503 PANTHER 2-CARBOXY-D-ARABINITOL-1-PHOSPHATASE-RELATED 420 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00885 Cca-Chr4 9344041 9349660 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00885 K22200 - gmx:100798495 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00885 04 9344041 9349660 Cca04g00885 04 9344041 9349660 ECH