Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00883 ATGTTCCCCAAGGGTTCTCATCTCCACCTTCTCCCTCTAGCAACGAAGCATCACTTTTCGCAGCTTCCACGTTCAGCGTTTACCCTCGCCGACGGAGCCCAAACGGAAGACGCCGCCGCAATAGCCAAACTAGTCCTCGAATCCAACCCAGGCACTCTCCCCAAGGCCCTATACAGGCCCACCATCCAATGGACCCCAGAGCTCGTGGACAAGGTCCTGAAGCGCCTCTGGAACCACGGGCCCAAGGCTCTCCAATTCTTCAAGCACCTGGGCCGCCACCCCTCCTACACCCACTCTTCCTCGGCCTTCGACCTCGCCATCGACATCGCGGCCCGCATGCGCGACTATAACTCCGCATGGGCCCTCCTGTCCCGCATGCGCTCCCTCCGTCATGGCCCAACTCCTCGCACCTTTGCCATTCTCGCTGAGCACTACGTCTCCGCTGGAAAGCCCCACCGCGCCGTGAATCTTTTCCTCTCCATGCAAGACTACGGTTGCCGCCTGGATCTTCACTCCTTCAACACCATCCTCGACATCCTCTGCAAGTCCAAGCGCGTTGAAATGGTGCACGACCTCTTCAAAACCCTAAGAAACAAATTCAATGCCGATAGCGTTAGTTACAACATAATCGCCAACGGTTACTGCATCGTTAAGCGCACGCCGATGGCGCTGCAAGTTTTGAAGGAGATGGTGGAGCGAGGGATTAGCCCTACCATGGTCACGTATAACACAATGCTGAAAGGCTATTTCAGGAATAAACAATTGAAAGAGGCTTGGGAGTTTTACTTGGAGATGAAGAAGAGGAAATGCGAGATTGATGTTGTGACTTACACCACTATGATTCACGGTTTGGTGTTGCGGGTTTTGTGTAAGAAGGAGAGTGTGGAGAGTGCAATGGTGGTTTTTGAGGAGATGGTGAGGGAGGGGTTGTGTGTGCCTAATGTGACAACTTACAACATTGTGATCATAGGTTTGTGTCATGTTGGGGACATGGAGAGGGCGTTGGGGTTTATGGGGAGGATGGAGGAGCATGGTTTGAGGGCTAGTGTTCAGACTTATAATGTTCTAATTCGATACTTTTGTGATGCTGGGGAGATTGAGAAGGGTTTGGAGGTGTTTGGGAAAATGGGGGGTGGCGAGTGTTTGCCTAATTTGGATTCGTACAATGTTTTGATTTGTGCAATGTTTGTGAAGAAGAAGTCGGAGGATTTGGTGGTGGCTGGGAAGTTATTGATGGAGATGATTGATAGAGGGTTCTTGCCTAGGAAGTTTACTTTTAATAGGGTTTTGAATGGACTTGTTCTTACAGGAAATCAGGAGTTCGCAAAGGAGATACTTAGAAAGCAGAGCAAGTGCGGAAGGGTTGTTCGTCGTTTGAAATTGTGA 1386 0.5065 MFPKGSHLHLLPLATKHHFSQLPRSAFTLADGAQTEDAAAIAKLVLESNPGTLPKALYRPTIQWTPELVDKVLKRLWNHGPKALQFFKHLGRHPSYTHSSSAFDLAIDIAARMRDYNSAWALLSRMRSLRHGPTPRTFAILAEHYVSAGKPHRAVNLFLSMQDYGCRLDLHSFNTILDILCKSKRVEMVHDLFKTLRNKFNADSVSYNIIANGYCIVKRTPMALQVLKEMVERGISPTMVTYNTMLKGYFRNKQLKEAWEFYLEMKKRKCEIDVVTYTTMIHGLVLRVLCKKESVESAMVVFEEMVREGLCVPNVTTYNIVIIGLCHVGDMERALGFMGRMEEHGLRASVQTYNVLIRYFCDAGEIEKGLEVFGKMGGGECLPNLDSYNVLICAMFVKKKSEDLVVAGKLLMEMIDRGFLPRKFTFNRVLNGLVLTGNQEFAKEILRKQSKCGRVVRRLKL 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00883 461 TIGRFAM PPR: pentatricopeptide repeat domain 352 384 IPR002885 -
Cca04g00883 461 TIGRFAM PPR: pentatricopeptide repeat domain 240 274 IPR002885 -
Cca04g00883 461 TIGRFAM PPR: pentatricopeptide repeat domain 137 169 IPR002885 -
Cca04g00883 461 TIGRFAM PPR: pentatricopeptide repeat domain 284 314 IPR002885 -
Cca04g00883 461 TIGRFAM PPR: pentatricopeptide repeat domain 172 197 IPR002885 -
Cca04g00883 461 TIGRFAM PPR: pentatricopeptide repeat domain 205 238 IPR002885 -
Cca04g00883 461 TIGRFAM PPR: pentatricopeptide repeat domain 317 348 IPR002885 -
Cca04g00883 461 Pfam PPR repeat family 237 284 IPR002885 -
Cca04g00883 461 Pfam PPR repeat family 313 361 IPR002885 -
Cca04g00883 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Cca04g00883 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Cca04g00883 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Cca04g00883 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Cca04g00883 461 Pfam PPR repeat 285 310 IPR002885 -
Cca04g00883 461 Pfam PPR repeat 140 166 IPR002885 -
Cca04g00883 461 Pfam PPR repeat 205 235 IPR002885 -
Cca04g00883 461 Pfam PPR repeat 172 197 IPR002885 -
Cca04g00883 461 Gene3D Tetratricopeptide repeat domain 198 285 IPR011990 GO:0005515
Cca04g00883 461 Gene3D Tetratricopeptide repeat domain 77 197 IPR011990 GO:0005515
Cca04g00883 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 312 IPR002885 -
Cca04g00883 461 SUPERFAMILY HCP-like 94 267 - -
Cca04g00883 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Cca04g00883 461 PANTHER OS02G0679200 PROTEIN 286 461 - -
Cca04g00883 461 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 286 461 - -
Cca04g00883 461 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 24 284 - -
Cca04g00883 461 Gene3D Tetratricopeptide repeat domain 342 460 IPR011990 GO:0005515
Cca04g00883 461 PANTHER OS02G0679200 PROTEIN 24 284 - -
Cca04g00883 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 199 IPR002885 -
Cca04g00883 461 Gene3D Tetratricopeptide repeat domain 286 341 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00883 Cca-Chr4 9326788 9328973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00883 96 456 Glycosyltransferase AT1G05670 27.624 2.36e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00883 - - gmx:100808784 717.227