Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00875 ATGGGTACCCTTCTTCCAGATGAAAAACAAGAGAATCCAAATGGTTTGGAACAACTTCAAAACCAAAAGGATGTTGATGCAGGTGCTCTCTTTGTCCTCAAATCCAAAGGTTCTTGGGTGCATTGTGGGTACCACTTGACAACGTCGATCGTGGCACCAGCTCTCTTGAGTCTTCCTTATGCATTCACGTTCCTTGGATGGACAAGTGGGATCTTATGCTTGGTGATAGGAGCATTTGTGACTTTCTATTCCTACAATTTAATATCTAGGGTTCTCGAACACCATGCTCAGATGGGTAAGCGTCAGCTACGGTTTAGGGACATGGCTCGCGATATTTTAGGCCCACGATGGGGTCGTTATTTTGTCGGCCCAACTCAGTTCGCAGTTTGTTATGGTGCTGTTGTAGCTAGTACTCTCCTGGGAGGACAATGCATGAAGGCAATTTACTTGCTGTCAAATCCAAATGGGACCATGAAGCTTTACGAGTTTGTAATCATATTTGGATGCTTCATGTTGTTTTTGGCTCAAATCCCATCTTTCCACTCGTTAAGGCACATTAATCTAGTTTCCTTGCTTCTGTGCTTAGCCTATAGTGCTGCTGCTACTGCTGGTTCCATATACATTGGAGAATCATCAAAAGGACCAGAGAAGGATTATTCTGTGAAAGGTGATTCAGTGAATCGCTTATTTGGAATTTTCAATGCAATTGCTATCATAGCCACGACTTATGGAAACGGAATCATTCCAGAAATTCAGGCAACAATAGCACCACCTGTAAAAGGGAAGATGTTAAAGGGACTATGTGTTTGTTATGTTGTACTTATAGCCACTTTCTTTAGCGTATCTATATCTGGTTATTGGGCATTTGGAAACGAATCTGAAGGCTTCATCTTAAGCAACTTTGTGGACAATGGGAAGCCCCTAGTACCCAAGTGGTTTATTTATATGACCAATATTTTCACTATAACACAATTATCCGCTGTTGGTGTGGTTTATTTGCAACCAACAAATGAAGTGCTGGAGCAAACATTTGGAGATCCAAAAAGTCCTGAGTTCTCTAAACGCAATGTAATCCCAAGAGTGATTACTAGGTCATTAGCTATTACTATTTCAACCACTATAGCAGCCATGCTTCCATTTTTTGGAGACATAAACTCTCTTATAGGAGCTTTTGGCTTTATCCCACTTGACTTCATCTTACCGGTAATTTTCTATAATTTTACATTTAAGCCATCAAAGCGAAGCCCTATTTTCTGGTTGAATGTAACTATTGCTGTGACTTTCTCCGCATTGGGAGCTATAGCAGCCGTAGCATCAGTTAGACAGATAATTCTTGATGCAAAAAATTATCAATTATTTGCTAATGTATGA 1371 0.4041 MGTLLPDEKQENPNGLEQLQNQKDVDAGALFVLKSKGSWVHCGYHLTTSIVAPALLSLPYAFTFLGWTSGILCLVIGAFVTFYSYNLISRVLEHHAQMGKRQLRFRDMARDILGPRWGRYFVGPTQFAVCYGAVVASTLLGGQCMKAIYLLSNPNGTMKLYEFVIIFGCFMLFLAQIPSFHSLRHINLVSLLLCLAYSAAATAGSIYIGESSKGPEKDYSVKGDSVNRLFGIFNAIAIIATTYGNGIIPEIQATIAPPVKGKMLKGLCVCYVVLIATFFSVSISGYWAFGNESEGFILSNFVDNGKPLVPKWFIYMTNIFTITQLSAVGVVYLQPTNEVLEQTFGDPKSPEFSKRNVIPRVITRSLAITISTTIAAMLPFFGDINSLIGAFGFIPLDFILPVIFYNFTFKPSKRSPIFWLNVTIAVTFSALGAIAAVASVRQIILDAKNYQLFANV 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00875 456 Pfam Transmembrane amino acid transporter protein 36 444 IPR013057 -
Cca04g00875 456 PANTHER GABA TRANSPORTER 1 25 452 - -
Cca04g00875 456 PANTHER OS05G0424000 PROTEIN-RELATED 25 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00875 Cca-Chr4 9157366 9161961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00875 128 456 Organic Solute Cotransporters AT1G08230 66.767 2.54e-157 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00875 - - gmx:100791114 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00875 04 9157366 9161961 Cca04g00875 04 9157366 9161961 ECH