Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00860 ATGGCTCCGTTTGCGTCAGAGAACGGCGTCgaaggggacgatgagagagaagaagacgaagaggaggaagaggaagacgaagaggaagtggaagatgaggaagacgaagaggaaCCGAGGCTCAAGTACCAGAGGATGGGAGGTAGCATACCTTCGCTGCTAGCGAGTGATGCCGCGTCGTGTATCGCCGTCGCGGAGCGGATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGCAATCAGGTTAAGGAATTCTCCGCACATGCTTCTGTTGTCAACGACCTTAGCTTTGACATAGAGGGTGAATATATTGGAAGCTGTTCTGATGATGGATCGGTTGTGATAAACAGCCTTTTCACTGATGAGAGAATGAAGTTTGAGTACCATCGCCCGATGAAGGCAGTTGCGATGGATCCTGATTATGCAAGGAAAATGTCTAGGAGATTTGTTGCTGGTGGTTTGGCTGGTCATTTATATTTAAATTCAAAAAAATGGTTGGGCTACCGTGACCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTTAAATGGAGGGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTATTACATTTATTGAAAAACCACGAGGGAGCCCACGCCCTGAGCTTTTGCTTCCTCACCTGGTTTGGCAGGATGACACCCTCTTGGTTATTGGCTGGGGAACATCTATCAAAATTGCTTCAATTAGGACAAATCACCATAGAGCAGCCAATGGGTCATTCAGGCAAGTTCCTTTGTCTGGTATGACCCAGGTGGATATTGTGGCATCTTTCCAAACCAGCTATTTCATCTCAGGACTTGCCCCCTTTGGTGATGCTTTGGTTGTTCTAGCATATATTCCTGGAGAAGAAGATGAAGTTAAGGATTTTAGTAGCACTGCTCCTTCACGGCAGGGCAATGCACAAAGACCAGAAGTAAGAATAGTAACATGGAATAATGATGAGCTTTCTACAGATGCTCTACCAGTACATGGGTTCGAGCATTACAGGGCAAATGACTATTCTCTTGCTCATGCTCCCTTTTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCCAAAGGATGTAGTTATTGCAAAGCCAAGGGATACTGAAGATCATATTGCTTGGCTTCTTCAGCATGGGTGGCATGAAAAAGCTTTGGCCGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAGGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATATGGTGAAGCAGCATCTTTGTGCCCCAAGTTGCTTCGAGGATCAGCTTCAGCATGGGAGAGATGGGTTTTCCACTTTGCACATCTTCGTCAACTCCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCATATGAGGTTGCTCTTGTTGCATTGGCTACAAATCCATCATTTCATAAGGATTTATTGTCCACTGTGAAATCCTGGCCATCTGTAATTTATTCTGCATTGCCTGTTATTTCAGCTATTGAACCTCAGCTAAATACTTCATCCATGACTGATTCGCTTAAGGAGGCATTAGCAGAGTTGTATGTAATCGATGGACAATATGAGAAAGCTTTCTCATTGTATGCTGATCTTTTGAAGCCAGAAGTATTTGATTTCATTGATAAACATAACTTACATGATGCAATTCGCGGAAAGGTTGTCCAACTAATGATGCTAGATTGCAAGCGTGCAGTTCCTCTGTTAATCCAGAACAGGGACATAATAAGTCCACCTGAAGTTGTGAAGCAACTTCTAAATGCTGTTGATACAAGTGATTGTAGATATTTTTTACATTTATATCTCCATTCATTATTTGAAGTAAATCCTCATGCTGGGAAAGACTTCCATGATATGCAGGTAGAACTCTATGCGGACTATGATCCAAAGATGCTGCTACCTTTTCTTCGTAGTAGTCAACACTACACCCTTGAGAAGGCTTATGAAATTTGCATTAAAAGAGACCTAATGAGGGAGCAAGTCTTCATCTTAGGAAGGATGGGCAACTCAAAACAGGCCCTAGCCATTATTATAAATAAATTGGGGGATATAGAAGAGGCTGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGCCTTCACAAACCTGAAATGGTTGGCATATTATTGGAGCACACGGTTGGAAATCTTGATCCGCTCTACATTGTAAATAAGGTTCCTAACGGGTTGGAAATACCTCGGCTACGGGATCGGCTGGTTAAAATTATCACTGATTACAGAACTGAAACATCACTCAGACATGGGTGCAATGATATCCTTAAGGCGGATTGTGTCAATCTTTTAATTAAGTATTACAAAGAGGCAAGGCATGGAATTTCTCTAGGTAATGAAGAAGATGGGCCACGGGTTAAAATGAGTGATACTCGTGCTTCTCAGGTATTTGAGAAATCCCCGAATCTGAGAACTATGGAGGTGAAATCAAAGACCAGGGGAGGTGGAAGATGTTGTATATGTTTTGAACCATTTTCTATACAGAATGTATCGGTCATTGCTTTCTTTTGCTGTCATGGTTATCACACAACTTGTCTCATGGATTCGTCTTACACGAGTAGTAACAAGAAAGAGATCGAAGCTAAATCCCCAGAGGCGGAAACGTATGATGATTACAATGGTTATGTGGACGATGCTAGCGATGATGAAGAAGAATCCAAGTTAGGTGGTCCTCGTATGCGTTGTATATTGTGTACTACTGCAGTTAGTTGA 2871 0.4173 MAPFASENGVEGDDEREEDEEEEEEDEEEVEDEEDEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHGGTVHILDFLGNQVKEFSAHASVVNDLSFDIEGEYIGSCSDDGSVVINSLFTDERMKFEYHRPMKAVAMDPDYARKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANDQRITFIEKPRGSPRPELLLPHLVWQDDTLLVIGWGTSIKIASIRTNHHRAANGSFRQVPLSGMTQVDIVASFQTSYFISGLAPFGDALVVLAYIPGEEDEVKDFSSTAPSRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYRANDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVIDGQYEKAFSLYADLLKPEVFDFIDKHNLHDAIRGKVVQLMMLDCKRAVPLLIQNRDIISPPEVVKQLLNAVDTSDCRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLMREQVFILGRMGNSKQALAIIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYKEARHGISLGNEEDGPRVKMSDTRASQVFEKSPNLRTMEVKSKTRGGGRCCICFEPFSIQNVSVIAFFCCHGYHTTCLMDSSYTSSNKKEIEAKSPEAETYDDYNGYVDDASDDEEESKLGGPRMRCILCTTAVS 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00860 956 Coils Coil 13 38 - -
Cca04g00860 956 MobiDBLite consensus disorder prediction 914 941 - -
Cca04g00860 956 Gene3D - 6 280 IPR015943 GO:0005515
Cca04g00860 956 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 1 954 - -
Cca04g00860 956 Gene3D Tetratricopeptide repeat domain 550 815 IPR011990 GO:0005515
Cca04g00860 956 Pfam Region in Clathrin and VPS 611 753 IPR000547 GO:0006886|GO:0016192
Cca04g00860 956 MobiDBLite consensus disorder prediction 11 37 - -
Cca04g00860 956 SMART ring_2 871 951 IPR001841 -
Cca04g00860 956 SUPERFAMILY WD40 repeat-like 56 249 IPR036322 GO:0005515
Cca04g00860 956 SMART CLH_2 610 757 IPR000547 GO:0006886|GO:0016192
Cca04g00860 956 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 610 757 IPR000547 GO:0006886|GO:0016192
Cca04g00860 956 MobiDBLite consensus disorder prediction 1 41 - -
Cca04g00860 956 SUPERFAMILY RING/U-box 865 908 - -
Cca04g00860 956 PANTHER VACUOLAR PROTEIN SORTING VPS41 1 954 IPR045111 GO:0006623
Cca04g00860 956 SMART WD40_4 172 208 IPR001680 GO:0005515
Cca04g00860 956 SMART WD40_4 84 123 IPR001680 GO:0005515
Cca04g00860 956 PIRSF Vps41 1 912 IPR016902 GO:0034058|GO:0046907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00860 K20184 - gmx:100804340 1796.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00860 04 8973732 8984975 Cca04g00860 04 8973732 8984975 ECH