LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca04g00859	ATGCAGCCGAATTTGTTTCCCTTTGGAAGCGTGCTGGGGAATCCGTTCATCTTCAATGACGATTTGAGCGAGGGAGGGATCGAGAGCTCTAGGGTTTTCTTCTTGCTCCCGTTCTTCTTGCTCTCCCAGGGAGGAGCAATGGATTTGTCCAAAGTCGGCGAAAAAATCTTGAGCTCCGTTAGGTCCGCGAGATCTCTCGGATTGCTCCCTCCCGTTCCTGATCGCCCCGAGGTTCCAGCTCGAGCTGCTGCTGCAGCTGCCGTAGCTCGTGCTCTTGCAGGGTTACCTCCTCATCAGAGATATAGTCTTTCATCAAGTTCAGAAGAATTGAGTTCAATTTATGGAAGCAGACCTCAAGGGCAAGTAGTGGAGGAGCTGGAGGGTGAATTTTATGAAGAGGATTTTGATCCAGTTAGGCATGTTTTAGAGCACATTCCAGCTGAAGAAAACGAGCTAACATATTTTGAAAAACAGGCTGCCCTTAGATTGGCACAACTGGATAGAGTAGCTGAGCATTTATCTCGCCATGTTATGGAGCATCATGAAGTAATGGTGAAGGGGATGAATTTGGTCAGAGAATTGGAAAAAGACTTAAGAATTGCAAACGTCATCTGTATGAATGGAAGAAGACACTTGACATCATCTATGAATGAGGTTTCAAGGGATTTGATTGTGAATTCTTATTCAAAAAAGAAACAAGCTCTTCTGGACATGCTTCCAACCTTGACTGAACTTCAACGTGCTTTGGACATGCAATCAACACTTGAATCCCTTGTAGAGGAAGGGAATTACTGGAAGGCATTTCAAGTCCTATCTGAGTATTTGCAACTCTTAGATAGTTTGTCAGAGCTTTCAGCAATACAAGAGATGAGTCGTGGTGTGGAGGTTTGGCTGGGAAGAACTTTACAGAAGCTGGATGCTCTTTTATTGGGAGTATGCCAGGAATTCAAGGAAGATGGCTATATAACAGTAATTGATGCATATGCATTAATAGGGGATACTGTCGGTCTTGCTGAAAAGATACAGAGTTTCTTCATGCAAGAAGTTATATCAAAAACACACTCTGTATTAAAGGCTATTGTGCATGAGGATGAGGAGGGACTTCCGCAAAATAGTAGGCTAACTTACAGCGATCTATGCCTTCAAATACCTGATTCAAAGTTCAGGCAATGCTTATTAAGAACATTGGCTGTTCTATTTGACCTTATGTGTTCATACCATGAAATTATGGATTTCCAGCTAGATAGAAAGGATTCATCAGCGCAAACTAGAACCAATTGCAATGAAGACATTTCCTGTAGTCCAAGTGAGGCTCGGGAAGTTGATTCAGATGTAAGAGCCTGCAACAATTCTATGTCCAGTTCCGGTGATGTAATACATGGCTCATCTTCTAGGGAGGAATCTGCAACAATGAGCTCACTGACTGAAACTATTGGTTCACCACACAGTGATTCTTGTGATCCAATTAGGGAGGCTGGAAAGGAGGACAGTTCAACATCAAGCATTGAATCTCCTTGGTACCATCTTCGCCAAGAAGCTACAACATTTGTTTCACAGACCCTTCAAAGAGGACGCAGGAATCTGTGGCATCTCACTGCAAGTCGTGTGTCAGTATTGCTTTCTTCTGCTGCAGCTTGTACAGCTAGCATCCATCAATTCTTGAAAAATTATGAAGATCTCAGTGTCTTTATTTTGACCGGCGAAGCCTTTTGTGGAATTGAAGCAGTTGAGTTTAGGCAGAAATTAAAGGTTGCTTGTGAAAACTATTTCATAGCTTTTCATCGACAAAATGTGCATGCCCTAAAAATGGTTTTGGAGAAAGAGACTTGGCTAAAATTACCTCCAGAAACAGTACAAATTATCAGTTTTGCAGGGCTTATTGGGGATGGAGCACCATTGATTTCTTTATCCAGCGGTAAATCAATTAATGTGAGTGCAATCCATTCTGATAAATCGGTGAATATGGTTCAGACTGGTGCTAGGAGGAATGGGTTTTCTCCCTGGATTAAAAGTGGAAACCCTTTCTCGCAAAAATTACCAACCTCCAACGAAGGTCATGGTTACTCCCAACCCAATGGATCAGTTTGTAGTGAATTTGACAGAAGTTCTGCCAATAACCTTCATGATGATAAAGTCTCACCTAGAAAGAGCGATTCAAATCAAATGAATGGTTCCAATTCTGTTTCAGAAGACGAAAATGAGGATCTACTTGCTGACTTTATTGATGAAGACAGTCAACTACCAAGTCGAAGTTCTCAACCTCATCATTCAAGAACTCTCTCTTCACATGGTAATGATGAAGAGAATACAACCCAGACTGGATCTTCTCTCTGTCTTTTAAAGTCTATGGATAAATATGCAAGGCTTATGCAGAAATTGGAAGTGGTAAATGTTGAGTTCTTTAAGGGAATATGCCAATTGTTTGAAATTTTTTTCTATTTTATATACGAAACATTTGGTCTGCAAAGCACTAGCTCAAGTGGAAAAGGCTCGACCAACTCACTTAATTATCGCTTGAGAACAGCTTTATCCAGAGTAAACCAAGATTGTGAAGAGTGGATCAAGTCTCAATCGTCTTCACCTACATCTTTGAGTTCATCATTTGTACATGCTGAGTTGACACCTACAAGCCCTCCCAATACAAATTTTCTTCACTCTCCAGGGACTTCTTTGGGTCTCAAGGAAAGATGTGTGGCTGTTGACACTATATCTCTTGTTGCTCGAATATTGAATAGATCTAAAGCTCATCTCCAATCAATGCTCTTGCAAAGTAATTCAACTATACTCGAGGATTTCTATGTTCATCTGGTGGATGCTGTACCAGATCTTACAGAACATGTTCATCGGACTACAGTGAGACTACTGTTGCACATTAATGGATATGTTGAACGTGTTGCCAATTGTAAATGGGAATTAAAAGATCTTGGCATGGAGCATAATGGATATGTTGATTTGTTGCTGGGGGAGTTTAAACACTATAAAACACGACTTGCTAATGGAGGACTTCGTAAAGAGACTCAAGACCAATTATTGGATTATGGGCTTGAAAATGTGGCGGAAACTCTTGTTGAAGGACTTTCACGGGTGAAGAGATGTAGTGATGAAGGACGAGCTCTTATGTCATTAGATCTGCAGGTCTTAATTAATGGGTTACATCATTTTGTGTCGCTGAATGTGAAGCCCAAGCTACAAATGGTTGAAACTTTCATCAAGGCTTACTACCTTCCCGAGACAGAATATGTGCACTGGGCACGAGCACACCCGGAATACAGTAAAAGCCAGATTGTTGGACTGATCAACCTTGTTGCTACTATGAAAGGTTGGAAGAGGAAAACCAGGTTGGAAATACTTGAAAAGATTGAATGA	3366	0.4124	MQPNLFPFGSVLGNPFIFNDDLSEGGIESSRVFFLLPFFLLSQGGAMDLSKVGEKILSSVRSARSLGLLPPVPDRPEVPARAAAAAAVARALAGLPPHQRYSLSSSSEELSSIYGSRPQGQVVEELEGEFYEEDFDPVRHVLEHIPAEENELTYFEKQAALRLAQLDRVAEHLSRHVMEHHEVMVKGMNLVRELEKDLRIANVICMNGRRHLTSSMNEVSRDLIVNSYSKKKQALLDMLPTLTELQRALDMQSTLESLVEEGNYWKAFQVLSEYLQLLDSLSELSAIQEMSRGVEVWLGRTLQKLDALLLGVCQEFKEDGYITVIDAYALIGDTVGLAEKIQSFFMQEVISKTHSVLKAIVHEDEEGLPQNSRLTYSDLCLQIPDSKFRQCLLRTLAVLFDLMCSYHEIMDFQLDRKDSSAQTRTNCNEDISCSPSEAREVDSDVRACNNSMSSSGDVIHGSSSREESATMSSLTETIGSPHSDSCDPIREAGKEDSSTSSIESPWYHLRQEATTFVSQTLQRGRRNLWHLTASRVSVLLSSAAACTASIHQFLKNYEDLSVFILTGEAFCGIEAVEFRQKLKVACENYFIAFHRQNVHALKMVLEKETWLKLPPETVQIISFAGLIGDGAPLISLSSGKSINVSAIHSDKSVNMVQTGARRNGFSPWIKSGNPFSQKLPTSNEGHGYSQPNGSVCSEFDRSSANNLHDDKVSPRKSDSNQMNGSNSVSEDENEDLLADFIDEDSQLPSRSSQPHHSRTLSSHGNDEENTTQTGSSLCLLKSMDKYARLMQKLEVVNVEFFKGICQLFEIFFYFIYETFGLQSTSSSGKGSTNSLNYRLRTALSRVNQDCEEWIKSQSSSPTSLSSSFVHAELTPTSPPNTNFLHSPGTSLGLKERCVAVDTISLVARILNRSKAHLQSMLLQSNSTILEDFYVHLVDAVPDLTEHVHRTTVRLLLHINGYVERVANCKWELKDLGMEHNGYVDLLLGEFKHYKTRLANGGLRKETQDQLLDYGLENVAETLVEGLSRVKRCSDEGRALMSLDLQVLINGLHHFVSLNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQIVGLINLVATMKGWKRKTRLEILEKIE	1121

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca04g00859	1121	MobiDBLite	consensus disorder prediction	669	702	-	-
	Cca04g00859	1121	Pfam	Protein of unknown function C-terminus (DUF2451)	891	1121	IPR019514	-
	Cca04g00859	1121	PANTHER	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN-RELATED	2	1121	-	-
	Cca04g00859	1121	MobiDBLite	consensus disorder prediction	665	732	-	-
	Cca04g00859	1121	PANTHER	UNCHARACTERIZED	2	1121	IPR040047	GO:0032456\|GO:0042147\|GO:1990745
	Cca04g00859	1121	MobiDBLite	consensus disorder prediction	717	731	-	-
	Cca04g00859	1121	Pfam	Vacuolar-sorting protein 54, of GARP complex	123	412	IPR019515	-
	Cca04g00859	1121	MobiDBLite	consensus disorder prediction	452	482	-	-
	Cca04g00859	1121	MobiDBLite	consensus disorder prediction	452	503	-	-
	Cca04g00859	1121	MobiDBLite	consensus disorder prediction	745	773	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca04g00859	K23288		-	gmx:100803274	1957.57

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca04g00859	04	8952447	8969978	Cca04g00859	04	8952447	8969978	ECH