Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00858 ATGGAGAAGCTTCATCATTTTGTCTTCATTCTCTTATTCCTAGTCCTTGTTCATAGAGGAAAGGTATTAGCTTTGAAGAGCCAAGATGGATCAGAGGAATGGGGATACGTACAAGTCAGACCCAAAGCCCACATGTTTTGGTGGCTTTACAGAAGTCCCTATAGAGTGGAAGACCCCTCTAAGCCATGGCCAATTGTTCTATGGTTGCAAGGAGGACCTGGTGCTTCAGGAGTTGGGATTGGAAATTTTGAGGAGGTTGGGCCTTTGGACACAAGCTTGAAGCCACGCAATTCCACATGGTTGAGAAAAGCAGATCTCTTGTTTGTGGACAATCCAGTTGGAACGGGGTACAGTTTTGTGGAGGACAAAAAGCTCTTTGTGAAAACAGATGAGGAAGCAGGCACTGACTTGACTACATTGTTGATTGAGATATTCAATGGGGATGAGAAACTGCAAAAGAGCCCTCTGTTCATTGTGGCAGAGTCATATGGCGGCAAATATGCTGTCACTCTTGCGTTATCTGCTCTCAAAGCTATAGAAGAGGGGAAATTGAAGCTTATACTTGGAGGTGTGGCATTAGGAGACAGTTGGATCTCCCCAGAAGATTTTGTGTTCTCATGGGGTCCTCTCCTCAAAGACCTCTCAAGACTTGATGATAATGGACTGCAAAAATCAAACAGTATAGCTGAGAGGATCAAGCAGCAACTTGAGGAGGGTAAATTTGTTGATGCCACCAACTCATGGAGTGAACTTGAGTCAGTGATTTCTGCTAGCAGCAACAATGTGGACTTCTACAATTTTTTGGAAGATGAAGGAAGTAATGACTTATCAGCAATGGAGTTGGGGTTATACAAAGAAATATCGATGAAGAGGTACTCAAGGTATCTTACTTTCTTGAGGTCAAGGTCAACTCCTGGTGGTGATAATGATCTTGACGAGTTACTAAACGGTGCCATAAAGAAAAAGTTGAAGATCATCCCTGAGAATGTCACATGGGGAGGGCAGTCAAATGATGTTTTTACATACCTTGAAGGTGATTTTATGAAACCAAGAATTAATGAGGTTGATGAACTGCTGGCAAAAGGAGTCAATGTGACTGTGTACAATGGACAAGTTGATCTGATTTGTGCAACCAAGGGGACTGAAGCTTGGGTTAACAAATTAAAGTGGGAAGGGCTTAAAAATTTCTTGGGGAAAGACAGAACACCCCTCTACTGTGGAAGTGACAAATCGACGACCAAAGGCTTTGTTAAGTCATACAAAAACCTTTACTTCTATTGGATCCTCAAAGCTGGACATTTTGTACCCACTGATCAACCTTGCGTCGCACTAGACATGGTGGGTGCATTTACACACTCACCAGCTACATGA 1371 0.4289 MEKLHHFVFILLFLVLVHRGKVLALKSQDGSEEWGYVQVRPKAHMFWWLYRSPYRVEDPSKPWPIVLWLQGGPGASGVGIGNFEEVGPLDTSLKPRNSTWLRKADLLFVDNPVGTGYSFVEDKKLFVKTDEEAGTDLTTLLIEIFNGDEKLQKSPLFIVAESYGGKYAVTLALSALKAIEEGKLKLILGGVALGDSWISPEDFVFSWGPLLKDLSRLDDNGLQKSNSIAERIKQQLEEGKFVDATNSWSELESVISASSNNVDFYNFLEDEGSNDLSAMELGLYKEISMKRYSRYLTFLRSRSTPGGDNDLDELLNGAIKKKLKIIPENVTWGGQSNDVFTYLEGDFMKPRINEVDELLAKGVNVTVYNGQVDLICATKGTEAWVNKLKWEGLKNFLGKDRTPLYCGSDKSTTKGFVKSYKNLYFYWILKAGHFVPTDQPCVALDMVGAFTHSPAT 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00858 456 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 8 453 IPR001563 GO:0004185|GO:0006508
Cca04g00858 456 Gene3D alpha/beta hydrolase 16 455 IPR029058 -
Cca04g00858 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 96 108 IPR001563 GO:0004185|GO:0006508
Cca04g00858 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 109 119 IPR001563 GO:0004185|GO:0006508
Cca04g00858 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 169 IPR001563 GO:0004185|GO:0006508
Cca04g00858 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 423 436 IPR001563 GO:0004185|GO:0006508
Cca04g00858 456 PANTHER CARBOXYPEPTIDASE 8 453 - -
Cca04g00858 456 ProSitePatterns Serine carboxypeptidases, serine active site. 158 165 IPR018202 GO:0004185
Cca04g00858 456 SUPERFAMILY alpha/beta-Hydrolases 21 453 IPR029058 -
Cca04g00858 456 Pfam Serine carboxypeptidase 30 452 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00858 Cca-Chr4 8940814 8946115 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00858 K09646 - gmx:100808412 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00858 04 8940814 8946115 Cca04g00858 04 8940814 8946115 ECH