Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00856 ATGACTATAGGGTCAATAGAGCAACAAATTCCACCACAAGTGGAAGAATCAAGAGTTTCTAAGCAAGAAGGAGAAGATGCAAAGATAATAAGAATGGATATAGCACAAGAAGGGATTGAAGAGTGCAAAACACCAACTTGTTCAAGCAACAAGATTCCCATGATTCAAAAATGCCCACTTGCCCCAAGAAAGAAAAGAAGTAGGTCAATCCCACAATTTTCTTCATGCATGAAAAGATCATCGTCAAGTGATTTGAACCATGTAATAAGGCATGATGAGAAAAGCTTAAAGGGTAAGGCAAAAAGAAATAGTGAATGCATGGCTCCTAAACGTGAGAAGATGGTGATAAGATCCACGAAGAAAGTAGTGGAATCAAGTGTGGAAGTTTCGGTTGTAGGAAGCACCAGCACCAAAAGAAAAACCCGTGGAAACAAAGATAATATTCACACAACAGATGAAGAAGTTGTGAGTGGCCAAGAGCATGTGAAGGTCATTCCCATTCCCATTCAAGAAGTGGCTTCTCATGCACAAAAGGATTCCCCTATATCTGCCATCACCACTGAAAACAAAGGTGATCAAGAGAATACCACTAATCAAGATTATGGTGAAGGAGTGCAAACTCAAAAGGAAGAGAATGAGGAAGTGAAGAAGGCAAAAAAGAGGGGGAGAAAGAAAAGAGGGAGGAAAAGAAGTGAAGAAGGGTACCAAAGGTATGTGTATAAGGTGTTGAAGCAAGTCCACCCTGAAATGGGGATTTCTTCAAAGTGCATGACTATTGTGAACAACTTGATGAATGACATGTTTGAGAGGCTGGCTTTTGAGGCTTCTAGGCTTAAGGATTACACAGGGCACGTGACACTGTCTTCAAGGGAGATTCAAGGAGCAGTGAAGCTGGTTTTGCCAGGAGAGCTTGGGAAGCATGCCATTGCTGAAGGGGTCAAAGCTATCAACACCTACACTACCTATCATGCATAG 975 0.4164 MTIGSIEQQIPPQVEESRVSKQEGEDAKIIRMDIAQEGIEECKTPTCSSNKIPMIQKCPLAPRKKRSRSIPQFSSCMKRSSSSDLNHVIRHDEKSLKGKAKRNSECMAPKREKMVIRSTKKVVESSVEVSVVGSTSTKRKTRGNKDNIHTTDEEVVSGQEHVKVIPIPIQEVASHAQKDSPISAITTENKGDQENTTNQDYGEGVQTQKEENEEVKKAKKRGRKKRGRKRSEEGYQRYVYKVLKQVHPEMGISSKCMTIVNNLMNDMFERLAFEASRLKDYTGHVTLSSREIQGAVKLVLPGELGKHAIAEGVKAINTYTTYHA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00856 324 SMART h2b3 225 321 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00856 324 MobiDBLite consensus disorder prediction 1 16 - -
Cca04g00856 324 MobiDBLite consensus disorder prediction 174 231 - -
Cca04g00856 324 SUPERFAMILY Histone-fold 208 321 IPR009072 GO:0046982
Cca04g00856 324 MobiDBLite consensus disorder prediction 176 205 - -
Cca04g00856 324 MobiDBLite consensus disorder prediction 59 83 - -
Cca04g00856 324 MobiDBLite consensus disorder prediction 68 83 - -
Cca04g00856 324 Pfam Core histone H2A/H2B/H3/H4 188 298 IPR007125 GO:0003677
Cca04g00856 324 PANTHER HISTONE H2B.2 107 322 - -
Cca04g00856 324 MobiDBLite consensus disorder prediction 1 27 - -
Cca04g00856 324 PRINTS Histone H2B signature 293 306 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00856 324 PRINTS Histone H2B signature 254 274 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00856 324 PRINTS Histone H2B signature 276 293 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00856 324 PRINTS Histone H2B signature 235 253 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00856 324 PRINTS Histone H2B signature 306 319 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00856 324 PANTHER HISTONE H2B 107 322 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00856 324 Coils Coil 205 225 - -
Cca04g00856 324 Gene3D Histone, subunit A 196 322 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00856 Cca-Chr4 8919369 8924029 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00856 K11252 - gmx:100786873 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00856 04 8919369 8924029 Cca04g00856 04 8919369 8924029 ECH