Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00848 ATGCAACTACCAATGGCGGCCAACGCCGTCGTTTCACCCTCGCCGTTCCGTCCTAACTCGCTTCTCCGCTCCTCCTTCACCGGCGTCTCCGTTAAGTTCTCTCCCCAATCCCTAACCATCTCGCGCTCCAAGCCGCTCACCGTCCTCGCCGCCGCCAAGAAGGCCGTCGCCGTCCTCAAGGGTAACTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAGGAAGACGATGGCCCAACAAAAGTTACTGTTCGCATTACTGGCCTTACCCCAGGGCTTCATGGTTTTCACCTACATGAGTACGGTGATACCACAAATGGGTGTATCTCAACGGGAGCACATTTTAATCCTAATAACTTGACACATGGTGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAATTGCTAATGCAGATGGGGTTGCAGAGACTACAATTGTGGATAATCAGATACCACTCTCTGGCCCCAATTCAGTAGTTGGAAGAGCCTTGGTGGTTCATGAGCTTGAGGATGACCTTGGAAAGGGTGGGCATGAACTTAGTTTGACAACTGGAAATGCTGGTGGAAGATTAGCATGCGGTGTGGTTGGTTTGACTCCAGCATAA 615 0.5268 MQLPMAANAVVSPSPFRPNSLLRSSFTGVSVKFSPQSLTISRSKPLTVLAAAKKAVAVLKGNSAVEGVATLIQEDDGPTKVTVRITGLTPGLHGFHLHEYGDTTNGCISTGAHFNPNNLTHGAPEDEVRHAGDLGNIIANADGVAETTIVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPA 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00848 204 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 94 104 IPR018152 -
Cca04g00848 204 PANTHER SUPEROXIDE DISMUTASE [CU-ZN] 1 53 202 - -
Cca04g00848 204 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 53 202 IPR024134 -
Cca04g00848 204 CDD Cu-Zn_Superoxide_Dismutase 61 196 IPR001424 GO:0006801|GO:0046872
Cca04g00848 204 PRINTS Cu-Zn-superoxide dismutase family signature 94 116 IPR001424 GO:0006801|GO:0046872
Cca04g00848 204 PRINTS Cu-Zn-superoxide dismutase family signature 130 139 IPR001424 GO:0006801|GO:0046872
Cca04g00848 204 PRINTS Cu-Zn-superoxide dismutase family signature 149 171 IPR001424 GO:0006801|GO:0046872
Cca04g00848 204 PRINTS Cu-Zn-superoxide dismutase family signature 174 200 IPR001424 GO:0006801|GO:0046872
Cca04g00848 204 Gene3D Superoxide dismutase, copper/zinc binding domain 49 203 IPR036423 GO:0006801|GO:0046872
Cca04g00848 204 Pfam Copper/zinc superoxide dismutase (SODC) 65 199 IPR001424 GO:0006801|GO:0046872
Cca04g00848 204 ProSitePatterns Copper/Zinc superoxide dismutase signature 2. 188 199 IPR018152 -
Cca04g00848 204 SUPERFAMILY Cu,Zn superoxide dismutase-like 54 201 IPR036423 GO:0006801|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00848 Cca-Chr4 8797889 8801849 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00848 K04565 - gmx:100815376 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00848 04 8797889 8801849 Cca04g00848 04 8797889 8801849 ECH