Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00835 atgccatcatcatcatcatTACTCGCTCTGTCCCTTGTGTTGCTTTTCTTCGTGTCACGTTCTTTCTCCTATGCAAATTCTCGCTTCACTCATGATCGTGCCAACCTACCACAATCACAAGCACAAAAGCACATAAAAAGCCTTAACCTATTCCCAAAGGTCCAAGTTAACATCAACAACGATGCTGGTTTTGTCCCTGGTGAGATCGTGGAGAAGAAGTTCTCGTTTTTTGCTGAGTCTGGCTCTTCTGTTGAAGACCTTGGTCACCATGCAGGCTACTATTCACTTCCTCATTCCAAAGCTGCAAGAATGTTCTATTTTTTCTTTGAATCACGGAAGAGTAAGGATGATCCTGTAGTCATATGGTTGACTGGAGGACCTGGATGTGGCAGTGAATTAGCTTTGTTTTACGAAAATGGTCCTTTTCATATTGCCAATAACTTGTCGCTTACATGGAATCCATATGGTTGGGACCAGGCATCAAATATTTTATTTGTTGACCAACCTACGGGTACAGGTTTTAGTTACTCTTCTAGTACAAGTGACTTTCGTCATGATGAAACGGGTGTTAGCAATGATTTATATGACTTCTTGCAGGAGTTTTTCAAGGCACATCCTGAGTTTGTTAAAAATGACTTTTATATCACTGGAGAATCATATGCTGGACACTATATTCCAGCTCTTGCATCCCGAGTTAACCAAGGAAATAAGAAAAAAGAAGGAATTCACATAAGCCTCAAGGGTTTTGCTATCGGTAATGGGTTAACAAATCCCGCAATTCAATACCCAGCATACACAGATTTTGCATTAGAAAACAAAATAATTTCAAAGGCTAATTACGATAAAATCAGCAAGTCAATCCCAGGCTGTGAACAAGCCATTAAAACTTGCGAAACTCAAGGTGGAAAAAGTTGCGAGATTGCATTTGGTACTTGTGTAGGCATATTCAATAGGATCTTGTCCATTGTTGGCGACATTAATTACTATGATATCAGAAAAAAATGTGTGGGACAGTTGTGCTATGACTTCCAAAACGTGGAGAAATTGCTAAATCTAAAGAAAGTGAAGAGTGCTTTAGGTGTGAGGAAGGACTTGGAGTTTGTTTCATGCAGTTCAACAGTGTATGATGCTATGCTGCAAGATTGGATGAGGAACCTAGAAGTGGGGATTCCTACTCTTCTTGAGGATGGAATCAATATGCTTGTGTATGCTGGGGATAAGGATTTCATTTGCAATTGGCTTGGTGAGCCTACTTCATTCATTTCAAAGATTGCTTTTGTTACTAATTTGAGAGGGACTTTCTATGTAGGGTGTTTTAGACTTCCTACATTGGTCTTAAACCCATAA 1347 0.3905 MPSSSSLLALSLVLLFFVSRSFSYANSRFTHDRANLPQSQAQKHIKSLNLFPKVQVNINNDAGFVPGEIVEKKFSFFAESGSSVEDLGHHAGYYSLPHSKAARMFYFFFESRKSKDDPVVIWLTGGPGCGSELALFYENGPFHIANNLSLTWNPYGWDQASNILFVDQPTGTGFSYSSSTSDFRHDETGVSNDLYDFLQEFFKAHPEFVKNDFYITGESYAGHYIPALASRVNQGNKKKEGIHISLKGFAIGNGLTNPAIQYPAYTDFALENKIISKANYDKISKSIPGCEQAIKTCETQGGKSCEIAFGTCVGIFNRILSIVGDINYYDIRKKCVGQLCYDFQNVEKLLNLKKVKSALGVRKDLEFVSCSSTVYDAMLQDWMRNLEVGIPTLLEDGINMLVYAGDKDFICNWLGEPTSFISKIAFVTNLRGTFYVGCFRLPTLVLNP 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00835 448 PRINTS Carboxypeptidase C serine protease (S10) family signature 201 226 IPR001563 GO:0004185|GO:0006508
Cca04g00835 448 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 176 IPR001563 GO:0004185|GO:0006508
Cca04g00835 448 PRINTS Carboxypeptidase C serine protease (S10) family signature 153 165 IPR001563 GO:0004185|GO:0006508
Cca04g00835 448 PANTHER SERINE CARBOXYPEPTIDASE 3 30 416 - -
Cca04g00835 448 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 30 416 IPR001563 GO:0004185|GO:0006508
Cca04g00835 448 SUPERFAMILY alpha/beta-Hydrolases 88 415 IPR029058 -
Cca04g00835 448 Gene3D alpha/beta hydrolase 68 430 IPR029058 -
Cca04g00835 448 Pfam Serine carboxypeptidase 87 418 IPR001563 GO:0004185|GO:0006508
Cca04g00835 448 ProSitePatterns Serine carboxypeptidases, serine active site. 215 222 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00835 Cca-Chr4 8633356 8636089 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00835 K16298 - gmx:100798795 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00835 04 8633356 8636089 Cca04g00835 04 8633356 8636089 ECH