Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00827 ATGGATCTTTCTCTTGACTCTCATTCTAACATTGGACCTTCTTTTGTGGAAGGCGTGGAGACGGTGAAGCTGGAGAGCGACGCCGGGAAGGTCACGGTCACCGGGAAAGTGGACCCCGCCAAGTTGAGGGACTACCTCGCGGAGAAGACCAAGAAGAAGGTCGAAATCCTCTCTCCGCAGAACAAGAAGGAGAAGGAGAAGGAGAACAAGGACGCCAAAACTAACAACAAATCAGAGGACAAAACCGACGATAAGAAAACCAAAGACAAAGAGGTGGTGACCACCACGGTTCTGAAGGTGGCAATGCATTGCCAGGGATGCAAAGACAGGATTTGCAGGATTGTGTACAAAACCAAAGGAGTTCAAGAAATGAACGTTGACGAGGAGAAGGAAACAGTGACTGTGAAGGGGACCGTGGACATTAAGGCTCTGGCGGGGAATCTTACGGAGAAGCTTAGGAGGGAGGTTGTGGTGGTTCCTCCCAAGAAAGGCAAGGACGGTGAGAAGGAAGGTGGTGAGAATGAAGGATCAGGGAAGAAGAAGAACAAGGGTGGCAGTGGTGGAGGAGATAAGAATGAGAATGTTGAAGTGGAAGGAGAGAAAATATATAACAGAATAGAGCATTTGGTACCTCCCTTtggttttggttatggtcatgggcatgggcatggttttgggcacggctatgttggtgggtatagctatgTGCCAGTGTACCCAGAGCAGATGCACCTTCACTTGCATGCACCACCACCACAAATGTTCAGTGATGAGAACCCGCATGCTTGTTCCGTCATGTGA 801 0.4519 MDLSLDSHSNIGPSFVEGVETVKLESDAGKVTVTGKVDPAKLRDYLAEKTKKKVEILSPQNKKEKEKENKDAKTNNKSEDKTDDKKTKDKEVVTTTVLKVAMHCQGCKDRICRIVYKTKGVQEMNVDEEKETVTVKGTVDIKALAGNLTEKLRREVVVVPPKKGKDGEKEGGENEGSGKKKNKGGSGGGDKNENVEVEGEKIYNRIEHLVPPFGFGYGHGHGHGFGHGYVGGYSYVPVYPEQMHLHLHAPPPQMFSDENPHACSVM 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00827 266 ProSiteProfiles Heavy-metal-associated domain profile. 94 135 IPR006121 GO:0046872
Cca04g00827 266 MobiDBLite consensus disorder prediction 158 195 - -
Cca04g00827 266 MobiDBLite consensus disorder prediction 53 89 - -
Cca04g00827 266 CDD HMA 97 141 IPR006121 GO:0046872
Cca04g00827 266 Coils Coil 62 82 - -
Cca04g00827 266 Pfam Heavy-metal-associated domain 98 152 IPR006121 GO:0046872
Cca04g00827 266 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 16 266 IPR044594 GO:0046872
Cca04g00827 266 SUPERFAMILY HMA, heavy metal-associated domain 93 149 IPR036163 GO:0046872
Cca04g00827 266 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 3 16 266 - -
Cca04g00827 266 Gene3D - 14 65 - -
Cca04g00827 266 Gene3D - 90 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00827 Cca-Chr4 8475660 8477705 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00827 - - gmx:100820520 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00827 04 8475660 8477705 Cca04g00827 04 8475660 8477705 ECH
Cca10g00547 10 5903858 5905066 Cca04g00827 04 8475660 8477705 PCT