Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00825 ATGGTGGAGCACAAAGTAAGAAGAAGCATCAGCAAAATGAGGGTTGTAGGTGGCATGTTGAAGTTGAAGAGTGTGTTGGAAAAGCTTCAAAAGAATCTCTTATTGTGCAGGCATAAAACGAGTTCCTCCTATTATGGAGATTATGAAGATGTGAAAGAAGGGCATTTTGTTGTGATTGCTGAGCATGGAGAGGGGCCAAAGAGATTTGTGGTGCCATTGAAGTTTTTGAACAACTCAAGATTCTTGAGGCTCTTGGAGGAAGCAGCAGAAGAATATGGGTTTGATCAACGTGGTGCACTAGCCATTCCTTGCAGGCCTAGTGAACTTGAGATGATATTGGCTCAGCAATGGGACAAGGAAATAAGAGAGAGATTCTGA 378 0.4259 MVEHKVRRSISKMRVVGGMLKLKSVLEKLQKNLLLCRHKTSSSYYGDYEDVKEGHFVVIAEHGEGPKRFVVPLKFLNNSRFLRLLEEAAEEYGFDQRGALAIPCRPSELEMILAQQWDKEIRERF 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00825 125 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR32-LIKE 25 121 - -
Cca04g00825 125 Pfam Auxin responsive protein 43 113 IPR003676 GO:0009733
Cca04g00825 125 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 25 121 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00825 Cca-Chr4 8459195 8460048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00825 10 114 Calmodulin-binding Proteins AT4G34750 39.048 1.09e-14 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00825 04 8459195 8460048 Cca04g00825 04 8459195 8460048 ECH
Cca10g00545 10 5881646 5882214 Cca04g00825 04 8459195 8460048 PCT