Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00820 ATGAGCAATTCTCACTCTGCAAATCATGATGAAGCAACTGTGGTGGGATTTGAAGTTCCAAAATCCCCTGATTCCAGTTACAATAATGTCTACCCTGGAAATGAAGATGAGGCAAGGGATCCACCTGTGGTCCCCTCACATCTGCAACACACTTTGCTCAATTATCCTGCAAGTAGAGACACTGCAGGAACGCTCCCATTGCCTCAGAATGTGATTCTAAATCATCTTTACATCGAGAATAGAGAGCCTCCAAGATCTGTGGTGGCTTTGGGATTCACTCATCGTTTCCGTTCTAAATATGTTACAGTCGTGCTTTACAAACCAGTTCAAAGAAGGGGAAATACAAGCATTTAA 354 0.4294 MSNSHSANHDEATVVGFEVPKSPDSSYNNVYPGNEDEARDPPVVPSHLQHTLLNYPASRDTAGTLPLPQNVILNHLYIENREPPRSVVALGFTHRFRSKYVTVVLYKPVQRRGNTSI 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00820 117 Gene3D - 13 109 - -
Cca04g00820 117 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 115 IPR043554 -
Cca04g00820 117 SUPERFAMILY AMPKBI-like 12 109 IPR037256 -
Cca04g00820 117 SMART AMPKBI_2 20 109 IPR006828 GO:0005515
Cca04g00820 117 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-3 1 115 IPR030067 GO:0009744|GO:0043562
Cca04g00820 117 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 38 108 IPR006828 GO:0005515
Cca04g00820 117 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00820 Cca-Chr4 8423441 8426570 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00820 - - gmx:102661902 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00820 04 8423441 8426570 Cca04g00820 04 8423441 8426570 ECH