Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00818 ATGGCCTCCACCAACGCTCTCTCTTCAGCCTCCATTCTTCGCTCTCCCAATCGCCAGAGTCAGAGTCTCACCCGAAGAGTGAACCACAACGGAAGAGTCAATTACCGCCAACAGAACCACCGTTTCGCGGTCAAGGCCTCCGCCAAAGAGATTGCGTTCGACCAGAATTCCCGGGCCGCGATGCAGGCCGGCATTGACAAGCTCGCCGACGCCGTTGGCCTCACTCTTGGGCCCAGAGGGAGGAACGTTGTGTTGGACGAGTTTGGAAGTCCTAAAGTGGTTAACGATGGTGTCACCATTGCTCGCGCTATTGAGCTTCCCGATGCTATGGAGAATGCTGGTGCAGCTCTTATTAGAGAGGTTGCTAGTAAGACGAATGACTCTGCGGGTGATGGGACGACCACGGCCTCGGTTCTTGCGCGCGAGATAATTAAGCTCGGGCTTCTAAGTGTGACTTCTGGGGCTAACCCTGTCTCTCTCAAGAGAGGGATTGATAAAACTGTGCTGGGTTTGGTGGAGGAGTTGGAGAAGAAGGCTAGGCCTGTTAAGGGTGGAGATGATATCAAAGCTGTTGCTTCTATTTCTTCTGGGAATGATGAGTTGATTGGTCAAATGATTGCCGAGGCGATTGACAAGGTTGGACCTGATGGTGTTTTGTCCATTGAGTCTTCGTCTTCGTTCGAGACCACGGTAGAAGTGGAAGAAGGGATGGAGATTGACAGAGGGTATATCTCGCCTCAGTTTGTTACAAACCCAGAGAAGTCAATTGTTGAGTTTGAGAATGCGAGGGTGTTGATTACGGATCAGAAGATTTCAGCAATAAAAGATATCATTCCACTGTTGGAGAAAACCACTCAGTTGAGAGCTCCTTTGCTTATCATCGCTGAAGATATCACTGGTGAGGCTTTGGCCACCCTTGTTGTGAATAAGCTGCGTGGTATCCTTAATGTTGCTGCCATCAAAGCTCCTGGTTTTGGTGAGCGGCGAAAGGCCCTCCTTCAAGACATTGCTATATTGACAGGTGCTGAGTTCCAAGCTAGTGATCTGGGGCTGCTTGTTGAAAACACCTCAGTGGAGCAGCTTGGTTTGGCTAGAAAATTGACCATCACCAAGGATTCTACCACCATCATTGCTGATGCCGCAACAAAGGATGAGTTGCAAGCTAGGATTGCTCAGTTAAAGAAGGAGTTGTCAGAGACAGACTCGATCTATGATACTGAGAAACTGGCCGAGAGGATAGCTAAATTGTCTGGTGGAGTTGCAGTCATCAAGGTTGGTGCTGCTACAGAGACTGAACTCGAGGACCGTAAGCTCCGAATTGAAGATGCCAAGAATGCAACTTTTGCCGCCATTGAGGAAGGTATTGTACCTGGTGGAGGTACTGCACTGGTTCATCTCTCTACTCAGGTCCCAGCAATCAAGGAGAAGCTCCAGGATGCAGATGAGAGGCTTGGAGCCGACATTGTGCAAAAGGCACTGGTAGCTCCTGCAGCATTGATTGCTCAAAATGCAGGAATAGAAGGTGAAGTTGTTGTGGAGAAAATAAAGAATGGTGAATGGGAGGTTGGTTACAATGCAATGGTAGACAGGTATGAGAATTTAGTGGAGgctggagttattgaccctgccaaggtaacaaggtgtgcgttgcagaatgctgcttcagttgctggaatggtgttgaccacgcaggccattgtggtggaaaagcctaagcccaagGCACCTGTTGCTGCTGCCCCACAAGGCATTACTGTTTGA 1761 0.4594 MASTNALSSASILRSPNRQSQSLTRRVNHNGRVNYRQQNHRFAVKASAKEIAFDQNSRAAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVLGLVEELEKKARPVKGGDDIKAVASISSGNDELIGQMIAEAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGLARKLTITKDSTTIIADAATKDELQARIAQLKKELSETDSIYDTEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTQVPAIKEKLQDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMVDRYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPVAAAPQGITV 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00818 586 Pfam TCP-1/cpn60 chaperonin family 68 571 IPR002423 GO:0005524
Cca04g00818 586 SUPERFAMILY GroEL apical domain-like 228 420 IPR027409 -
Cca04g00818 586 CDD GroEL 49 569 IPR001844 GO:0042026|GO:0140662
Cca04g00818 586 MobiDBLite consensus disorder prediction 1 33 - -
Cca04g00818 586 PRINTS 60kDa chaperonin signature 72 98 IPR001844 GO:0042026|GO:0140662
Cca04g00818 586 PRINTS 60kDa chaperonin signature 127 154 IPR001844 GO:0042026|GO:0140662
Cca04g00818 586 PRINTS 60kDa chaperonin signature 312 335 IPR001844 GO:0042026|GO:0140662
Cca04g00818 586 PRINTS 60kDa chaperonin signature 394 419 IPR001844 GO:0042026|GO:0140662
Cca04g00818 586 PRINTS 60kDa chaperonin signature 442 463 IPR001844 GO:0042026|GO:0140662
Cca04g00818 586 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 584 - -
Cca04g00818 586 PANTHER BNAA04G16190D PROTEIN 1 584 - -
Cca04g00818 586 SUPERFAMILY GroEL equatorial domain-like 52 567 IPR027413 -
Cca04g00818 586 Gene3D - 181 454 IPR027410 -
Cca04g00818 586 TIGRFAM GroEL: chaperonin GroL 48 572 IPR001844 GO:0042026|GO:0140662
Cca04g00818 586 Gene3D GroEL 236 417 IPR027409 -
Cca04g00818 586 Coils Coil 376 403 - -
Cca04g00818 586 Hamap Chaperonin GroEL [groEL]. 47 584 IPR001844 GO:0042026|GO:0140662
Cca04g00818 586 Gene3D - 51 568 IPR027413 -
Cca04g00818 586 SUPERFAMILY GroEL-intermediate domain like 181 246 IPR027410 -
Cca04g00818 586 ProSitePatterns Chaperonins cpn60 signature. 449 460 IPR018370 GO:0005524|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00818 Cca-Chr4 8355646 8359303 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00818 - - gmx:100806471 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00818 04 8355646 8359303 Cca04g00818 04 8355646 8359303 ECH