Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00815 ATGATGTCCCACTCCCACCAGCATCCACAACCACAACAAAGACGGTTATTATCTCACTGCCTGAACCAACTTCATGAACACCCTGCTGAAAGCTCCCTCTCATCTTCTCAATCACACTACAAAACCAAAATCCCCTTGTGTCTTATTCACTCAGAAACTCCAACTCCAACATCAACCCCTAGAACCTCTTTCTTTAGCCCCAAGATTGTGTCATCACCCCCTCACCAACACTACTACTATTTCCATGAACCTGACACCCCCTCATTCCCTTTTTGTTTTAATGTCTCTTCTAGGCGTTGGAGTCCCTTCAAGCTTGGCTGCACCTCCATGGACCCTCATGTAGAATTCTCATCATCACTTCACTCTCCCTCTGAGATCATTAGGAAAAAGAAAATTACCGGGCGGCAAAAGAGAGAGGAGCTTGAAAGAGAGGTCGCTATGCTTCAAAGGTTGTTGGACCAAGAAGAAAAGGTTCATGAGATTTTGGAGATGGTTCATAATAGACCAAATGGGTCATCGATATCAATTCCCAATTTTCTTCCACCTAAGATGAGAGAACTCTTAGCTGAGCTAGTTATGGTTGAGGGTGAGATAGCACGACTTGAATGCCAAATAAGCCAACTCCAAGCTGGTTTGAAACATGAACAAGAAGTTACTAAGGAATCAAAGCCTAAAACGTGGAATCAAGGGAATTTGAGCAATTCCAACAATCATTTATCAACTTCACCGGTTCCAAATCCTAGTCCTATTCGGAGAATTGTTCAAGAAAGGATGGCATTTGAAACCAAGGCCTTGCATTTCATAAGCAAAGCTATAAAGGGCGATTATAATCTCAATGACTTCAGCCTTAATGACAAAACGGGATTTTTCAAAACTTCTGTCGAACAGAAAGAAACTAAGTTCCAAGAAGATGTGAAATTTCAAGAAAGACTTCCAAGAAAAAATGGCATAGTAAAGCCTCCCTCACCTATGCGTGACCCCCGCCATCCATCACCCAAGCTGAGAGAACGCAATCCAGAGATGTACTTGGATCTCCCAACTAGATCGCTACTGGATCCACTTCTGTCAGAAGAGAATGACCTGAAGTGGCAACCCAACAAGCTATCTGAGAGTATCATGAAGTGTTTGAATTTCATCTATGTAAGACTACTCAGAACATCAAGAGCAATGGAATTGGAGAAATCAGGGCCCGTTTCTAGGTCTGTGCACTCCTCTTTAAGCTCAAGAAGCTTCAGGGTGGACACTGGATCAAACCCAAAACCAAGCCTCCTGTTGCAAAAAGAATCAAGGCAGCAAGACCCTTATGGTATCTTTAACACAGAAGAGTCCATTCCAAGGGACATTGGTCCTTATAAGAACTTGGTTATATTCACCTCTAGCTCTATGGATCCCAAGTTCATCTCGAGTCCGTCCTCTATACCATTACTGAGGAAGTTAAGGATCTTGATGAGCAATCTTCAAACAGTTGACTTGAAAAGCCTTACAAACCAACAGAAGTTAGCTTTCTGGATCAACGTGTACAATGCTTGTATCATGCATGGATTTATCCAGTATGGAGTGCCATCCACCCCAGAAAAATTACTTGCGTTGATGAACAAGGCCACCCTCAATGTAGGAGGCAACACAATAAATGCTCAAGCAATAGAGCATTTCATATTGAGGAAACGAGATATTTCTAACATGAAAGAGGTACAGCGAAAGGGTGAATGGGAGGAGAAAGAATCGGTTGTCCGTGAACTTTATGGACTTGAGTTTATAGATCCTAATGTCACATTTGCTCTCTGTTGTGGAACACGTTCTTCTCCAGCTGTAAGGATATACACAGCAGATGGTGTTACATCTGAGTTAGAAAAATCAAAACTAGACTATCTTCAGGCCTCAATTCTTGCGACTAGCACCAAAAGGATAGCGTTTCCAGAGCTCCTCCTCAGAAACATGCTTGATTTTGCAGCAGACACAGACTCACTGGTGGAGTGGGTATGCAACCAGTTACCTACTTCTGGGACTCTAAGAAAATCAATGGTGGATTGTTTTAAAGGCCACAATAATGTCAAGGCTTCTACCATTATTGAAAAGATTCCCTATGACTATGAATTCCAGTATTTGTTGACAATATAA 2118 0.4216 MMSHSHQHPQPQQRRLLSHCLNQLHEHPAESSLSSSQSHYKTKIPLCLIHSETPTPTSTPRTSFFSPKIVSSPPHQHYYYFHEPDTPSFPFCFNVSSRRWSPFKLGCTSMDPHVEFSSSLHSPSEIIRKKKITGRQKREELEREVAMLQRLLDQEEKVHEILEMVHNRPNGSSISIPNFLPPKMRELLAELVMVEGEIARLECQISQLQAGLKHEQEVTKESKPKTWNQGNLSNSNNHLSTSPVPNPSPIRRIVQERMAFETKALHFISKAIKGDYNLNDFSLNDKTGFFKTSVEQKETKFQEDVKFQERLPRKNGIVKPPSPMRDPRHPSPKLRERNPEMYLDLPTRSLLDPLLSEENDLKWQPNKLSESIMKCLNFIYVRLLRTSRAMELEKSGPVSRSVHSSLSSRSFRVDTGSNPKPSLLLQKESRQQDPYGIFNTEESIPRDIGPYKNLVIFTSSSMDPKFISSPSSIPLLRKLRILMSNLQTVDLKSLTNQQKLAFWINVYNACIMHGFIQYGVPSTPEKLLALMNKATLNVGGNTINAQAIEHFILRKRDISNMKEVQRKGEWEEKESVVRELYGLEFIDPNVTFALCCGTRSSPAVRIYTADGVTSELEKSKLDYLQASILATSTKRIAFPELLLRNMLDFAADTDSLVEWVCNQLPTSGTLRKSMVDCFKGHNNVKASTIIEKIPYDYEFQYLLTI 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00815 705 Coils Coil 184 218 - -
Cca04g00815 705 Pfam Protein of unknown function, DUF547 492 624 IPR006869 -
Cca04g00815 705 Coils Coil 138 158 - -
Cca04g00815 705 MobiDBLite consensus disorder prediction 314 336 - -
Cca04g00815 705 PANTHER EXPRESSED PROTEIN 116 705 - -
Cca04g00815 705 MobiDBLite consensus disorder prediction 216 248 - -
Cca04g00815 705 MobiDBLite consensus disorder prediction 398 422 - -
Cca04g00815 705 MobiDBLite consensus disorder prediction 392 422 - -
Cca04g00815 705 MobiDBLite consensus disorder prediction 223 248 - -
Cca04g00815 705 Pfam Leucine-zipper of ternary complex factor MIP1 134 215 IPR025757 -
Cca04g00815 705 PANTHER TRANSPORTER, PUTATIVE-RELATED 116 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00815 Cca-Chr4 8325282 8331634 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00815 - - gmx:100809848 1253.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00815 04 8325282 8331634 Cca04g00815 04 8325282 8331634 ECH