Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00802 ATGGCCGGTAAAGGAGGAGCGACTCCGGCGACATACTCGCCGTCGCCGACGACCGATAAAAAGAAACCACCGCTTCTCAAGGAAGATTGGGTTCGGCCCGATGGCCGCGGTTTCCACCAGTGCAGACCTGCGTTTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTATGCTGAGTTTGGAAATACCAAGGTCATAGTATCTGTATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATTTACAGTGATATAGGACGTTTGAATTGTAATGTTAGCTTTACAACTTTTGCAACTCCAGTTCGAGGGCAGGGTTCAGACCACAAAGAGTACAGTACGATGCTTCATAAAGCTTTGGAGGGTGCAATAATACTGGAAACTTTCCCCAAAACAACGGTGGATGTTTTTGCATTGGTGCTGGAATCTAGTGGCAGTGATCTCCCAGTAGTTATATCATGTGCTAGCCTTGCCCTGGCAGATGCTGGAATAATGATGTATGATCTTGTTGCCTCAGTTTCTGTGTCATGTTTTAGCAAGAACCTTGTTATTGACCCTATTTTGGAGGAGGAAAACTGCCAAGATGGTAGCTTAATGGTCACTTGCATGCCTTCTCGCTACGAAATCACCCAGCTTACCATTACTGGGGAATGGTCCACTCCAAAGATTAATGAGGGAATGCAGCTGTGTTTGGATGCTTGTGCAAAACTTGCAAAGATTATGAGGTCGTGTTTGAAAGAAGCTGCTTCGGGTTCCCAGGAATAG 765 0.4654 MAGKGGATPATYSPSPTTDKKKPPLLKEDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMIYSDIGRLNCNVSFTTFATPVRGQGSDHKEYSTMLHKALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDLVASVSVSCFSKNLVIDPILEEENCQDGSLMVTCMPSRYEITQLTITGEWSTPKINEGMQLCLDACAKLAKIMRSCLKEAASGSQE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00802 254 PANTHER EXOSOME COMPLEX COMPONENT 16 249 - -
Cca04g00802 254 Pfam 3' exoribonuclease family, domain 2 168 229 IPR015847 -
Cca04g00802 254 SUPERFAMILY Ribosomal protein S5 domain 2-like 28 192 IPR020568 -
Cca04g00802 254 PANTHER EXOSOME COMPLEX COMPONENT MTR3 16 249 - -
Cca04g00802 254 Pfam 3' exoribonuclease family, domain 1 40 164 IPR001247 -
Cca04g00802 254 CDD RNase_PH_MTR3 41 247 - -
Cca04g00802 254 Gene3D - 19 253 IPR027408 -
Cca04g00802 254 SUPERFAMILY Ribonuclease PH domain 2-like 166 250 IPR036345 -
Cca04g00802 254 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00802 Cca-Chr4 8054320 8062816 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00802 K12587 - gmx:100819105 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00802 04 8054320 8062816 Cca04g00802 04 8054320 8062816 ECH