Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00793 ATGTACAAGAACCAGCTTCAGGAGCTGGCCCAGCGAAGCTGCTTCAACCTCCCTTCCTACACCTGCATTCGGGAAGGCCCCGATCACGCCCCCCGCTTCAAGGCCACCGTCAACTTCAACGGCGAGATCTTCGAGAGCCCCCACTACTGCTCCACTCTCCGCCAGGCCGAGCACTCCGCCGCCGAGGTCGCCCTCAATTCCCTCTCCCACCGCGCCCCCTCTCACTCCCTCGCCGCCAGGATCCTCGATGAAACGGGGGTTTACAAGAACCTCTTGCAGGAAATTGCTCAGAGGGTGGGGGCTCCGTTGCCGCACTACTTTACATTCAGGTCAGGCTTAGGACATCTTCCTGTTTTTACTGGGACGGTAGAGTTGGCTGGAATCATGTTTACTGGTGAACCTGCCAAGAATAAGAAACAAGCAGAGAAAAATGCTGCCATGGCGGCTTGGTCTTCTTTGAAGCAATTGGCAAAAGAAACTGCCAAGTCTTCAACTGAGCCAGAGAACAATGACGAACTAGAACAAATCACTATAGCACGGGCCTTACTGAACTACCGACTGAAGGAAAAGATTTCAATGTCAAATCCAAATGCTCCAATTCCATTTCCAAAGATGTTTCAGATTCAGAATCCCAGGCCAACCAGTCCTCAGCCTCCACCTGCCGCCACATCAAAGATTCTTCCCTTAATTTGCCAAAAGGCAGCTCCTCGTAACAGGCATCTAGTTGCAGCATCTCCAGCACCAGCTGTGAGTGACAATTCTGCAATGCCGCAACTTTCTGCTACACCAGATAGCCGAGGAATTCGTCGCCCCAAGTTCCCTGCTGCCGGAGCAGCTCCTTATGTTCCCATTAGACAAATGAGACCACCTTGCCATGGGATGGCACCACCGGTAACGATTCGGACTGCAATACCTGTATTCTCCccaccaccaccaccagcagcagccacTGCAGCTGCAGTGTCCCATCAAGTACTACGAGCTCCTTCTGTACGAGTTGCTCCTCCAGTCACTATCCGGCAAGCTGTTCCAGTATTTGCTGCTCCACCAGTTAGAAAAGATGAACCTATTCCCATTATAAAAGACGCTCCAGTATTTGCTGCTCCGCCCATTAGAAAAGATGAACCTGTTCCCGTCCTAAAAGACGTTCCAGTATTTGCTGCTCCACAGGTTAGAAAAGATGAAGCTGTTCCCATCCTAAAAGACGTACCAGTGTTTGCTGCTCCACCGGTTAGAACGGACGAACCTGTTCGCTCCCCAAAAGACGATCCACCAACAATTAGTGCCCCTAGCCTGGAAGACAAATTGCCAGCCCAAACTCCGGAGACAGAAACCAAGACTGGGACTATTTCACCTGAATCTGAGATGGTGCCGAGCATGGAGCAGCTGAAAATTTGA 1398 0.5029 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALNSLSHRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPHYFTFRSGLGHLPVFTGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETAKSSTEPENNDELEQITIARALLNYRLKEKISMSNPNAPIPFPKMFQIQNPRPTSPQPPPAATSKILPLICQKAAPRNRHLVAASPAPAVSDNSAMPQLSATPDSRGIRRPKFPAAGAAPYVPIRQMRPPCHGMAPPVTIRTAIPVFSPPPPPAAATAAAVSHQVLRAPSVRVAPPVTIRQAVPVFAAPPVRKDEPIPIIKDAPVFAAPPIRKDEPVPVLKDVPVFAAPQVRKDEAVPILKDVPVFAAPPVRTDEPVRSPKDDPPTISAPSLEDKLPAQTPETETKTGTISPESEMVPSMEQLKI 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00793 465 MobiDBLite consensus disorder prediction 246 272 - -
Cca04g00793 465 Gene3D - 84 155 - -
Cca04g00793 465 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 356 - -
Cca04g00793 465 PANTHER - 1 356 - -
Cca04g00793 465 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Cca04g00793 465 SMART DRBM_3 88 154 IPR014720 -
Cca04g00793 465 SMART DRBM_3 2 69 IPR014720 -
Cca04g00793 465 Gene3D - 2 83 - -
Cca04g00793 465 MobiDBLite consensus disorder prediction 409 465 - -
Cca04g00793 465 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Cca04g00793 465 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Cca04g00793 465 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Cca04g00793 465 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Cca04g00793 465 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Cca04g00793 465 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Cca04g00793 465 MobiDBLite consensus disorder prediction 441 456 - -
Cca04g00793 465 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00793 Cca-Chr4 7881362 7884411 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00793 - - gmx:100816445 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00793 04 7881362 7884411 Cca04g00793 04 7881362 7884411 ECH