Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00784 ATGGCTTGCAGTGTGGAAAATTGTGATATGGGTAGTGGGGTGGTTCATCCAGCCACAGATGCTTATGCTGGAGAGGCAGTTGAAGCTTTGAAAGCTGGGAAAGTCATTGCAGTGCCCACTGATACACTCTATGGCTTTGCTTGTGATGCTTGTTCATTGGAAGCGGTTAACAGGATTTATGAGATTAAAGGCCGTAGACATACAAGCCCTCTGGCTATTTGTGTCGGTGACGTATCAGATATAGCCCGTTTTGCTGTCACTGACCATTTACCTCATGGTCTGCTTGATTCCCTCCTACCTGGGCCTGTTACAGTTGTACTAAAACGAGGAGAGTCAAGTGTTCTTGAACGATCATTGAACCCAGGATTTGATAGTATAGGAGTTAGAGTACCTGATTGCAACTTCATCAGGATCATTGCCCGTGGTTCAGGAACTGCCCTAGCTCTAACCAGTGCAAACCTAAGTGGACAGCCAAGTAGTGTGACCATCAAAGATTTTGAGAACCTCTGGGAACACTGTGCTTTTGTTTATGATGGTGGTTTGCTTCCATCAAGTCGTGCAGGTTCAACAGTTGTGGACCTCACTGCACCGCACAAATACAGGATACTTAGACCTGGAAGTGCAAAGGACGAGACAGTTGCCATCTTGGAAAAGCATTCTTTCGTTGAGGAAGTGACCTCTTAA 684 0.4591 MACSVENCDMGSGVVHPATDAYAGEAVEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRRHTSPLAICVGDVSDIARFAVTDHLPHGLLDSLLPGPVTVVLKRGESSVLERSLNPGFDSIGVRVPDCNFIRIIARGSGTALALTSANLSGQPSSVTIKDFENLWEHCAFVYDGGLLPSSRAGSTVVDLTAPHKYRILRPGSAKDETVAILEKHSFVEEVTS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00784 227 TIGRFAM TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 25 212 IPR006070 GO:0003725
Cca04g00784 227 Gene3D DHBP synthase 15 218 - -
Cca04g00784 227 ProSiteProfiles YrdC-like domain profile. 20 208 IPR006070 GO:0003725
Cca04g00784 227 Pfam Telomere recombination 28 206 IPR006070 GO:0003725
Cca04g00784 227 SUPERFAMILY YrdC/RibB 23 208 IPR017945 -
Cca04g00784 227 PANTHER SUA5 5 225 - -
Cca04g00784 227 PANTHER YRDC DOMAIN-CONTAINING PROTEIN, MITOCHONDRIAL 5 225 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00784 K07566 - gmx:100791087 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00784 04 7798637 7801288 Cca04g00784 04 7798637 7801288 ECH