Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00782 ATGGGGGAACCTCTTTCAAACACCGAACTCTCTCCCTCTAAAACCCTAGACCCAACCAACGGCCCCGATTCCATTTTAGATTCCAATCTAACGGCTCCACAAGACGCTCAACTCAATCCAGAAAACCACGATGTCGTTTCGACCGCCAAGCGGAAGAGGGACGACGAGCGTTCGCTCCATCCACTGTGGAAGACCAGCCTCTGTTCCTACTTCAGGAGCCATAACGCCTCCTGCAGCCACGGCGGCGCGTGCCGATACGCGCACGGCGAGGAGGAGCTCCGCCCTCGCCCCGACAACACGTGGGACCCGACCTCCAAGCGCGCGAAGAAGGCCTTAGAGGCCGAGGCCGACGAAAAGCGCGCCGTCTCGgaggacgtgatgatgacggaggccgtcgttgacggcggcgacgacgacgacgGTTCCGGCTCCAATCGCGCGCTTAGTAAATGCTTGGTGCATTTGCCGCGGAAATGGAGCTCCGAGAATTTGAGGAATTTCCTCAACGAAGAGGGTGTACCTTTTAAGTTTGCTAAGAAAAAGAAAGGAATGATGATTGGTTTTGTTACCTTCGAAGACGAAGAACAAATGAAGAGTTCATCAAAGGATTTAGATGGAAAAACAATTGGCAATAAAAAGATAAAGGTTGCTGATGTCATTCCTCGATCATTTAAAAAGAAAAGTAGCGCCAATGTTGCATCCCATCAAGAATTAGCTGAGGAGAATACAGGGGCTGATGTCCCTTCAAGTGGGACTATGGATGGTGAAACGAGTAATGATAAGTTGGCTGTTGATGGTTCTGTGACAAAGACAAGAAACGTGCGTGATGCAGTTACTCCTCTAGCTCATATGGCCTATGCTGATCAGTTGGAGCAGAAAAAAAGCTCTCTCATGCAGATTCTCAAAAAACTTACTAGAAATGCTCGGAAAGCTTGTCCAAATGGCGTTTCACTTCCTGAGTGGATTCTCAAATCTAGGGAAATAGGTAGTGGTCTTCCGTGCAAACTAGAGGGTATTATTGCATCTCCAATTGTAAATGGATATCGTAACAAGTGTGAATTTTCGGTTGGATATTCTCTGGAAGGCAAAGTGACTGTAGGTTTCATGCTTGGAAACTTCAGCAGGGAAGGTGTAACAGCAGTTGGGGAAGCGGTGGACTGCCCAAATGTTTCAACAATTGCTTGCAAATATGCTACAATCTTTCAGGAATTTCTGCAGCACAGTGATTTACCAGTTTGGAATAGATTTAAAAATACTGGGTTTTGGCGTCAATTGACGGTTCGAGAAGGGAGGACAAATGGGAATGTTGTTGATGCTGAAGCTTTTGGTGGTATTGCAGAAGTCATGCTTATTGTGCAGGTTTCTAGTGCAAGCTTTGATGATGCAAAAGTAGCTGCTGAATTCAAGAGGCTTTCTCAGGCATTTGTTGCCGGAGCTACTTCACATTGTCCATCATTACCCCTTACAGAAACACTATTATTATTCCTATTATCTTAA 1497 0.4449 MGEPLSNTELSPSKTLDPTNGPDSILDSNLTAPQDAQLNPENHDVVSTAKRKRDDERSLHPLWKTSLCSYFRSHNASCSHGGACRYAHGEEELRPRPDNTWDPTSKRAKKALEAEADEKRAVSEDVMMTEAVVDGGDDDDGSGSNRALSKCLVHLPRKWSSENLRNFLNEEGVPFKFAKKKKGMMIGFVTFEDEEQMKSSSKDLDGKTIGNKKIKVADVIPRSFKKKSSANVASHQELAEENTGADVPSSGTMDGETSNDKLAVDGSVTKTRNVRDAVTPLAHMAYADQLEQKKSSLMQILKKLTRNARKACPNGVSLPEWILKSREIGSGLPCKLEGIIASPIVNGYRNKCEFSVGYSLEGKVTVGFMLGNFSREGVTAVGEAVDCPNVSTIACKYATIFQEFLQHSDLPVWNRFKNTGFWRQLTVREGRTNGNVVDAEAFGGIAEVMLIVQVSSASFDDAKVAAEFKRLSQAFVAGATSHCPSLPLTETLLLFLLS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00782 498 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 63 90 IPR000571 GO:0046872
Cca04g00782 498 MobiDBLite consensus disorder prediction 1 57 - -
Cca04g00782 498 CDD RRM_SF 151 216 - -
Cca04g00782 498 Coils Coil 287 307 - -
Cca04g00782 498 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 78 490 IPR045850 -
Cca04g00782 498 Gene3D - 151 220 IPR012677 -
Cca04g00782 498 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 279 435 IPR029063 -
Cca04g00782 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 215 IPR000504 GO:0003723
Cca04g00782 498 ProSiteProfiles Zinc finger C3H1-type profile. 62 91 IPR000571 GO:0046872
Cca04g00782 498 MobiDBLite consensus disorder prediction 227 266 - -
Cca04g00782 498 SUPERFAMILY RNA-binding domain, RBD 154 226 IPR035979 GO:0003676
Cca04g00782 498 MobiDBLite consensus disorder prediction 226 266 - -
Cca04g00782 498 Gene3D - 349 492 - -
Cca04g00782 498 Gene3D - 56 96 - -
Cca04g00782 498 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 78 490 - -
Cca04g00782 498 MobiDBLite consensus disorder prediction 1 44 - -
Cca04g00782 498 SUPERFAMILY CCCH zinc finger 60 95 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00782 Cca-Chr4 7776437 7779009 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00782 K15332 - gmx:100777601 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00782 04 7776437 7779009 Cca04g00782 04 7776437 7779009 ECH