Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00781 ATGACGCAGGGTAACATAGCAAACGAAGGATCAAGAAACATCACTAGCAACAGATTTGAAATGAGGGACTTCATAAGCACTATGCCGAATGAGATCATTGGGAATATTTTATCTCGTTTGACAATGAAAGAAGCTGGTAGAACTAGCGTGCTCTCAACTACATGGAGATATCAATGGACTCATTTCTCTGGGGTCGTGGACTTTGATCACTCACTTAGGAGCTATGTCTTGCGTAGATTACACGTTGGACTTTTGACCAAGTGCATTTTTTTTGTTTCTGAGTGGGAGAAGTTCATGGCTCGTTTGGAACATGTCATGAAATCACTCAAATGCCCCTCCATGCAAGGACTCAGAGTTTGCATGGATTTGGGTAACCCTAGGAAGCTACCTGAGTGGCTTAAGTTTGCCTCAGAGAGGAATGTTCAAGTGTTGGACCTGGATTTTACGTATCACTTCACTGAACCATTCTATGGAATAAGTGACAACATTCGTAATGTGTTGTCATCAAAGAAGTTTGAAATGAAGTCACTGCGAGTGCTGCGTTTGGCTTGTGTGGACGTGAATGGTGAAGTCCTCCAGTGCTTTTTAGCAACTTGTCCACTGCTTGAAACAATACGTGTCACAGAATCCACACGCCTTGTGCGATTGAAAGTTTGGGGCCAAGGACTGAGGCTGAAGCATTTGGAGTTAGTTGAGTGCAATATTTTGTATCTTGATATTTGTGCTGAAAATCTCATGACATTTAGGTACTCTGGTGATTATGGAAAGTTTAACTTTGAAAGTGTTCCAAGCCTTGAGGAAGCCTCCTTTGGAGGGCGTTATGCTAGTTATCTGCAAGCAAACATGCACGATGAAGATTTTTTTGGAGTACTGTTGCAGGTTCATGTTCTGAAATTGAATTTGTCTACATATACTGTGGGGGTTATTGAAGGGCTCCCAGTATTCGATAATGTGAGGCAGTTGGAACTGCAAATTCCTCACATCTGTGGAGCGGATCTTGGTCGTCCAGTTTCTGTACTAAGTGCTTTCCCTTCAATATGTATGCTTAAGATTAAGTTCATGAGGTCCAATCTCGTGGATGTGGAGCATGAGTGGAAGGCAAATCTGAAACAGGAGTATCCAAAACTGAGGGAGCTGGAAGTGTCAGGATACAGAAGAGACCCCAGTCAAATTGAGTTGCTGATCAGCATATTTGCTAAGGCTCCTAATCTAAACAGGATTCTTGTGGATCCCTTGTCTTCATACTATGCGGATAGGTCACCTGATGTCAAGGCCAGGGTTAGAAATACTCGTCGTGACTCTACCTTATGGCTTGTTGATGCTCTCAAACCACATGTGCCTCCTTCAGTTGAGTTGATTGTCCTTTAG 1368 0.4291 MTQGNIANEGSRNITSNRFEMRDFISTMPNEIIGNILSRLTMKEAGRTSVLSTTWRYQWTHFSGVVDFDHSLRSYVLRRLHVGLLTKCIFFVSEWEKFMARLEHVMKSLKCPSMQGLRVCMDLGNPRKLPEWLKFASERNVQVLDLDFTYHFTEPFYGISDNIRNVLSSKKFEMKSLRVLRLACVDVNGEVLQCFLATCPLLETIRVTESTRLVRLKVWGQGLRLKHLELVECNILYLDICAENLMTFRYSGDYGKFNFESVPSLEEASFGGRYASYLQANMHDEDFFGVLLQVHVLKLNLSTYTVGVIEGLPVFDNVRQLELQIPHICGADLGRPVSVLSAFPSICMLKIKFMRSNLVDVEHEWKANLKQEYPKLRELEVSGYRRDPSQIELLISIFAKAPNLNRILVDPLSSYYADRSPDVKARVRNTRRDSTLWLVDALKPHVPPSVELIVL 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00781 455 Gene3D Ribonuclease Inhibitor 128 415 IPR032675 -
Cca04g00781 455 PANTHER F-BOX PROTEIN-LIKE 8 414 - -
Cca04g00781 455 SUPERFAMILY F-box domain 22 71 IPR036047 GO:0005515
Cca04g00781 455 SUPERFAMILY RNI-like 135 407 - -
Cca04g00781 455 Pfam F-box domain 25 59 IPR001810 GO:0005515
Cca04g00781 455 PANTHER - 8 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00781 Cca-Chr4 7761403 7769076 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00781 - - gmx:100778140 592.423