Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00780 ATGACAAAGAAAATACGTTTGGATTGTTCCTTGCAGGAGGATGAAGAGAAAGTGAGTAATAGCTTTGTGGAATTGGATATAAGGGAAGGAGTGAATGATGGTTTTCCTAGAATTGGACCAAATGATTCGCTTCTCCCTGGTCTTTTTGATGATGTTGCGCTGAATTGTCTTGCTTGGGTTAGTAGATCTGATTATGCTTCACTAGCATGTATAAATAAAAGGTACAACTTGCTGATTAGGAGTGGGTATCTATCCGGGTTGAGGAAGAAATTGGGGATTGTGGAGCTAGAGCATTTGGTTTATTTGGTTTGTGATCCAAGAGGATGGGAGGCATATGACCCCAAGAGGAATAGATGGATAACATTACCTAAGATACCGTGTGATGAGTGTTTTAATCATGCAGACAAGGAGTCATTGGCTGTGGGGAGTGAATTGTTGGTTTTTGGCCGGGAATTGATGGAATTTGCCATTTGGAAGTACAGCTTGATTTGCCGTGGTTGGGTGAAGTGTCAGGAGATGAACCGACCTCGCTGCTTGTTTGGATCTGGCAGTCTTGGTTCGATTGCCATTGTTGCTGGTGGAAGTGATAAATACGGCAATGTTCTTGAATCCGCGGAGTTGTATGACTCTTCTTCGGGTACGTGGGAACTGTTGCCAGACATGCATACGCCACGTAGATTGTGCTCTGGTTTTTTTATGGATGGAAAATTTTATGTAATTGGTGGCATGGCAAGTCCTATTGTTTCATTAACTTGTGGGGAGGAGTATGATCTTAAGACAAGAAATTGGCGGAAAATAGAGGGTATGTATCCATATGTTAATGGGGCTGCTCAGGCACCTCCACTTGTGGCAGTTGTGGATAATCAGTTGTATGCAGTAGAGCATCTTACCAACATGGTGAAGAAATATAACAAGGAAAATAACACTTGGAATGAATTGGGAAGGCTTCCGGTACGGGCCGATTCTTCTAATGGATGGGGCCTGGCTTTCAAGGCTTGTGGAGATAAACTTCTGGTTGTGGGTGGACAAAGGGGTCCAGAAGGTGAAGCTATTGTACTGAATTCATGGAGTCCTAGGACAGGGGTCAGAAATGGAACCATAGATTGGCAAGTACTTGGTGTGAAGGAGCATGTTGGGGTGTTTGTGTACAATTGTGCCGTTATGGGATGGTCTGGTGAGATGCTTTTAGATTGA 1194 0.4363 MTKKIRLDCSLQEDEEKVSNSFVELDIREGVNDGFPRIGPNDSLLPGLFDDVALNCLAWVSRSDYASLACINKRYNLLIRSGYLSGLRKKLGIVELEHLVYLVCDPRGWEAYDPKRNRWITLPKIPCDECFNHADKESLAVGSELLVFGRELMEFAIWKYSLICRGWVKCQEMNRPRCLFGSGSLGSIAIVAGGSDKYGNVLESAELYDSSSGTWELLPDMHTPRRLCSGFFMDGKFYVIGGMASPIVSLTCGEEYDLKTRNWRKIEGMYPYVNGAAQAPPLVAVVDNQLYAVEHLTNMVKKYNKENNTWNELGRLPVRADSSNGWGLAFKACGDKLLVVGGQRGPEGEAIVLNSWSPRTGVRNGTIDWQVLGVKEHVGVFVYNCAVMGWSGEMLLD 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00780 397 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 33 389 - -
Cca04g00780 397 Gene3D - 100 378 IPR015915 GO:0005515
Cca04g00780 397 Coils Coil 293 313 - -
Cca04g00780 397 SMART kelc_smart 188 235 IPR006652 GO:0005515
Cca04g00780 397 SMART kelc_smart 236 288 IPR006652 GO:0005515
Cca04g00780 397 SUPERFAMILY Kelch motif 108 345 IPR015915 GO:0005515
Cca04g00780 397 Pfam Kelch motif 224 269 IPR006652 GO:0005515
Cca04g00780 397 Pfam Kelch motif 176 221 IPR006652 GO:0005515
Cca04g00780 397 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 33 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00780 Cca-Chr4 7758175 7759368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00780 48 267 Miscellaneous Gene Families AT4G33900 27.273 5.39e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00780 - - gmx:100792139 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00780 04 7758175 7759368 Cca04g00780 04 7758175 7759368 ECH