Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00758 ATGTTGAAGAAGCAATCACTCTTATCCTTCTCACTAGCATTGCTAGTTTCATTTTTGTATTGCACCACCACTTTAGCCCAACTATCACCAGCTTCTGCTCCTATAAAACCACCCCAACCTAGCCCTACCCCACCAACTGAGGCTCCTAAACAACCATTGGTTCCCTCATTGCCACAATCACCAAGTGATTCCACCCCTGACACTGTAGCATCAATTGACATTGTTGGAATCCTGAGGAAGGCTAAGTCATTCAACATCCTAATTCGCCTCATGAAAACCACCCAATTGATCAACCAACTCAATGCACAGCTCCTCACTACTAAATCTGGCGGCATTACCATTCTTGCACCTGATGACAGCGCCTTCTCAGAACTCAAAGCAGGATTCCTCAACTCTCTTTCTGATGGACAAAAACTCGAGCTCCTACAGTTCCATGTTATTTCAGAGTATGTATCTAGCTCCAACTTTGATACTCTTACAAACCCTGTGAGAACACTTGCAGGGGCTAAGCCTGGAAAGGTGGAATTGAATGTGATAAGCTATGGTGGAAGTGTGAACATATCAACGGGTGAGGTAAACACCACCATCACTGGAATTATATATACAGATAAGCATCTTGCTATTTACAAGGTGGGGAAAGTGCTTCTTCCAATGGACTTCTTTGCTGTGGCCAAGGCACCTGCAAAGGGACCCTCTTTGGCTCCAGAACCATCTGCAAAGGCTCCTAAAGCGGATAAGGAGACGTCACTGTCCCCAGATTCCTCAGAATCATCTCAGATTAATTCCACAACAGAGAACTCTGGCACCGTGAAAATCAATGTGCATGGAAAGTGGGTGTCCCTTGTTTTCGGACTAGTTCTCCTGATTGCATTGTCATCTTACATATGTTCACATCTCACCACCAATCATGTGATTGATGCACAAACTTTGCATGATAGGCCAACACTCACCAGCAGCATCACCCTCAATACCAGAAACACACCCAAAAGGCTGCAACTGAACGTCACTACTTACGGTGGTTCCCATTTGAGCATGACCACCGGTGCCGTGAATGACAAGAAAGTTGGCATTTATGAAGTGGATAAAGTGCTTCTGCCATTTGACGTGCTTCTTTCCTAA 1119 0.4504 MLKKQSLLSFSLALLVSFLYCTTTLAQLSPASAPIKPPQPSPTPPTEAPKQPLVPSLPQSPSDSTPDTVASIDIVGILRKAKSFNILIRLMKTTQLINQLNAQLLTTKSGGITILAPDDSAFSELKAGFLNSLSDGQKLELLQFHVISEYVSSSNFDTLTNPVRTLAGAKPGKVELNVISYGGSVNISTGEVNTTITGIIYTDKHLAIYKVGKVLLPMDFFAVAKAPAKGPSLAPEPSAKAPKADKETSLSPDSSESSQINSTTENSGTVKINVHGKWVSLVFGLVLLIALSSYICSHLTTNHVIDAQTLHDRPTLTSSITLNTRNTPKRLQLNVTTYGGSHLSMTTGAVNDKKVGIYEVDKVLLPFDVLLS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00758 372 Gene3D FAS1 domain 57 217 IPR036378 -
Cca04g00758 372 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 284 - -
Cca04g00758 372 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 315 369 - -
Cca04g00758 372 Pfam Fasciclin domain 83 217 IPR000782 -
Cca04g00758 372 ProSiteProfiles FAS1/BIgH3 domain profile. 71 215 IPR000782 -
Cca04g00758 372 MobiDBLite consensus disorder prediction 251 265 - -
Cca04g00758 372 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 284 IPR045003 -
Cca04g00758 372 MobiDBLite consensus disorder prediction 33 56 - -
Cca04g00758 372 SUPERFAMILY FAS1 domain 67 218 IPR036378 -
Cca04g00758 372 SMART fasc_3 113 218 IPR000782 -
Cca04g00758 372 MobiDBLite consensus disorder prediction 32 67 - -
Cca04g00758 372 MobiDBLite consensus disorder prediction 229 265 - -
Cca04g00758 372 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 315 369 IPR045003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00758 Cca-Chr4 7617563 7619526 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00758 - - gmx:100776667 456.832