Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00748 ATGTTATCTTTCGCTAGAAATTGCTTCAAATATCCTGGTACCTACTTCACGAGGAATGTTTCAAATCAAAATATACTCTCCACAAACTCATTTCGCCACAAATTTCCTGAGCTCGATAATACTTTTGGGAAAAATTTACACAAGATAGGTTTCTTTCACCATACCCACAAATTTCACTCATTTATATTCCAAATCAGCACTAATTACACTCATTTTCCGGTCCCATTTGCACCATTTATTTCTCAATATTCAACCAAGGCTCCTTCAAGATCTTATAGAAGACGGGCTCGGAAGAGGTTGTTAAAGGCCTCCAAGCCTACCCTAGACCAAGCCCAATTTCAGTTGGTACTGTCCCAACTTCCCCCAAGGTTCACTCCTCAAGAACTATGCAATGTGATTACTCAACAAGATGACCCCTTAGTTTGCTTAGAATTGTTTCACTGGGCGTCTCAGCAGCCCCGGTTTCGGCACGATGAGTCCACATTTCATGTTGCCATAAAGAAGCTTGGTGCTGCACAGATGTACCAAGAGATGGATGACATTGTGAACCAATTGCTTGCGGTTCCGTTTATTGGTTCAGAGGCATTGTTCAACACGGTTATATATTATTTCACTCAGGCGCGGAAGTTGACTAGAGCTGTCCATGTGTTTAAGCACATGAAAAGTGGTAGGAATTTGAATTGCTGTTTTAGGCCTTCTCTTAGGACCTATAATATTCTTTTTGCGGCATTTTTGGGTAGAGGAAGCAACTCCTATATAAACCATGTGTATATGGAAACAATTAGGTGTTTGTTCAGGCAAATGGTCAATGATGGGATCAAGCCTGATATTTTTTCATTGAACACTATGATCAAAGGTTATGTGCTATCTCTTCATGTCAATGATGCATTGAGGATATTTCATCAGATGGGTGTGATCTATGATTGTCAGCCCAACGCTTTAACATATGATTGCTTGATTCACGGCTTGTGTGCACAAGGCAGAACAAATAATGCCAAAGAATTATGTTGTGAAATGAAGACCAAAGGCTTTGTTCCTAGTAGTAAATCATATAATTCGCTTGTCAATTCTTTGGCACTTGGTGGAGAGATTGAGGAGGCAGTAAATTATCTGTGGGAGATGACTGATAAGCAAAGGTCGGTTGATTTTATTACATATAGGACTGTACTGGATGAGATATGTAGACAAGGAACAATTCAGGAGGGCATGAGGTTTTTGCAGGAGTTGCAAGAAAAGGACCTTGTAGATGGGCATGCATACAGGAAGCTTCTATATGTGCTTGAAGATGACTATGGGAATTCAGTAAGCAATGTGGGAAATCGGTGA 1326 0.4027 MLSFARNCFKYPGTYFTRNVSNQNILSTNSFRHKFPELDNTFGKNLHKIGFFHHTHKFHSFIFQISTNYTHFPVPFAPFISQYSTKAPSRSYRRRARKRLLKASKPTLDQAQFQLVLSQLPPRFTPQELCNVITQQDDPLVCLELFHWASQQPRFRHDESTFHVAIKKLGAAQMYQEMDDIVNQLLAVPFIGSEALFNTVIYYFTQARKLTRAVHVFKHMKSGRNLNCCFRPSLRTYNILFAAFLGRGSNSYINHVYMETIRCLFRQMVNDGIKPDIFSLNTMIKGYVLSLHVNDALRIFHQMGVIYDCQPNALTYDCLIHGLCAQGRTNNAKELCCEMKTKGFVPSSKSYNSLVNSLALGGEIEEAVNYLWEMTDKQRSVDFITYRTVLDEICRQGTIQEGMRFLQELQEKDLVDGHAYRKLLYVLEDDYGNSVSNVGNR 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00748 441 Pfam PPR repeat 197 222 IPR002885 -
Cca04g00748 441 Pfam PPR repeat 279 303 IPR002885 -
Cca04g00748 441 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 14 437 - -
Cca04g00748 441 Gene3D Tetratricopeptide repeat domain 255 433 IPR011990 GO:0005515
Cca04g00748 441 Pfam PPR repeat family 311 359 IPR002885 -
Cca04g00748 441 TIGRFAM PPR: pentatricopeptide repeat domain 279 313 IPR002885 -
Cca04g00748 441 TIGRFAM PPR: pentatricopeptide repeat domain 315 347 IPR002885 -
Cca04g00748 441 PANTHER ATPASE EXPRESSION PROTEIN 3 14 437 - -
Cca04g00748 441 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Cca04g00748 441 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Cca04g00748 441 Gene3D Tetratricopeptide repeat domain 95 254 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00748 177 414 Glycosyltransferase AT1G05670 29.832 1.95e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00748 - - gmx:102666460 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00748 04 7489619 7493569 Cca04g00748 04 7489619 7493569 ECH