Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00742 ATGTCGGCACCGCAGAGATTTCTCTGCACATtctctcacgctatccctctctcttccgctctctcCACCTTCAAACCTAGACCCTTCGTTTTTCTTCCCTTCGCTCACTCTAACCGGACCTTAGCTCCTTCTCTCTCATCAATGCCTCGCAATCAGCGAAGTGGCGCGCAGGTGGCGCGGAGATGGAAAGAGAAAGGCAAGGCCGAGGGACAGTTATCCGCTGCGGGAGACGCAGGTGCAGCCGCAACTGCGGCGGAAACCGTTACTAACAGGCTTGCTGGAATGAGTATCGGAGAAAACAGTGGCAGAACCGCGGCGCAAGGTTCGATTGCGATTTGGAAACCTAAATCTTACGGAACCGCGAGTGGAGGCACTGTAACTGAAGCTGAAAATGGAGCAGGAGTTGCTGCGAGTGTGGCTTCGCCGCAAAAGAGTAGTAGTAGTGGTTTGAGTAAGATATTTCGCGGTAATCTGTTGGAGAGTTTCACTGTGGACAACTCCACGTACACACGTGCACAAGTCAGAGCGACTTTCTATCCGAAATTTGAAAATGAGAAGTCGGATCAAGAGGTCCGGACCAGGATGATTGAGTTGGTATCAAAAGGGCTGGCTACCTTAGAGGTTTCACTTAAACACTCTGGATCTCTTTTTATGTATGCTGGTCATGAGGGTGGAGCTTATGCAAAAAACAGTTTTGGAAATGTATATACTGCTGTTGGTGTATTTGTTCTTGGACGGATGTTTCGTGAGGCTTGGGGAACTGAAGCTTCAAAAAAACAGGCTGAGTTTAATAATTTTCTTGAGAGAAACCATATGTGCATATCAATGGAATTAGTAACTGCTGTTCTTGGAGATCATGGACAGCGTCCCCAAGAAGATTATGCGGTAGTTACAGCAGTTACTGAACTGGGCAATGGAAAGCCAAAGTTCTATTCAACTCCTGAGATTATTGCTTTCTGCCGAAAATGGCGCCTTCCAACAAATCATGTGTGGTTGTTTTCATCAAGAAAATCAGCCACTTCTTTCTTTGCTGCCTATGATGCCCTATGTGAGGAGGGGACTGCAACGTCTGTATGCAAGGCTCTCGATGAAATTGCTGACATCTCAGTACCAGGTTCAAAAGATCATGTAAAAGCCCAAGGTGAAATTTTAGAGGGTCTTGTGGCTCGTCTTGTAAGCCATGACAGTTCAAGCCATATAGAGAGAATTTTGAAAGAATTTCCTCCTCCACCTGCTGATGGAGTGGCCCTTGATTTTGGACCAAGTCTAAGGGAAATTTGTGCAGCAAATAGATCTGATGAAAAGCAGCAAATAAAAGCACTTCTCGAGAGTGTTGGTAGTTCTTTTTGTCCTGACTACACAGACTGGTTTGGGACCGATGCTGCTGATTATCATTCAAGAAATGCGGACAGATCTGTTCTTTCAAAGTTTTTACAAGCCCATCCTGCAGACTATTCAACTAAAAACTTTGATTTGAATTTGAATCAGGAAATGGTTCGGTTGATGAGGGAAAAACGATACCCTGCTGCATTCAAATGTTATCATAATTTCCACAAGGTTGATGCCATGTCAAGTGACAGTCTTTTCTATAAAATGGTCATTCATGTGCACAGTGATTCTGCTTTTCGGCGATACCAAAAAGAATTGAGGCTTAAACCAGGATTATGGCCACTATATCGAGGATTTTTTGTTGATATCAATTTATTTAAGGCAAACAAGGAGAATGCTGCTGAAATTTCTAAGAACAATGTAAATGAAATTGGTAACGGGAGCTCTGGGAAAGATGACTTAGCTGATGAAGATGCAAATTTAATGGTCAAATTAAAATTTCTTACATATAAGTTGCGAACCTTTCTCATTAGAAATGGCTTGCCAATTCTGTTCAAAGAAGGGCCAGGGGCTTACAAGGCTTATTACCTCAGACAAATGAAAATATGGGGAACCTCTTCAGCAAAGCAGAGAGAACTTAGCAAGATGCTTGATGAATGGGCTGTGTATATAAGAAGGAAGTGTGGAAATAGGCAACTGTCATCATCATCATATCTAAGTGAAGTCGAACCTTTTCTTGAGCAGTTTGCAAAACGTAGTCCACAAAACCAAGCTCTGATAGGTTCTGCTGGTAATTTAGTTAGGACTGAAGATTTCTTGGCCATTGTTGACGGAGGCCAGGATGAAGAAGGTGATCTTGTGGCAGAGCGGGAGATAGCACTGCCAGGGTCTACTATCTCAGTCAAGGACACAGTTCCAAAATATGAAGGGTTGATTGTATTCTTTCCGGGAATACCTGGTTGTGCTAAGTCTGCCCTTTGCAAAGAATTGCTAAATGCCCAAGGAGAACTAGGAGATGATCGACAAGTTCATAGTCTCATGGGTGACATGATTAAAGGAAAATATTGGCAGAAAGTAGCTGAAGAACGCAGAAAGAAACCAACTTCTATAATGCTTGCCGACAAGAATGCCCCAAATGAAGAAGTTTGGAAACTGATAGAAGACATGTGTCACAAGACCAGAGCATCTGCTGTACCAGTTGTGCCTGAATCTGAAGGAACTGATTCGAATCCATATTCTCTTGATGCATTAGCTGTTTTCATGTATCGTGTTCTTCAACGAGTTAATCACCCGGGGAATCTTGACAAAGCATCTCCAAATGCTGGCTATGTGCTGCTAATGTTTTATCATCTTTACGAGGGCAGGAGCCGTAAAGAGTTTGAGGGTGATTTAATTGAGCGTTTTGGGTCTCTTGTCAAGATGCCACTATTGAAATCTGATAGGAATCCCCTTCCCGAGGCAGTGCAGTCCATTTTAGAGGAAGGAATTGATCTATATAAACTCCACACTAAGAGACATGGAAGATTAGAGTCTACCAAAGGATCATACGGAAAAGAATGGATAAAATGGGAGAAACAGTTACGGGAAACTCTTTCTGGAAATGCCCAGTATTTCAATTCTATTCAGGTTCCATTTGAATTTGCTGTCAAGCAAGTGTTGGAACAAATAAGAAACATTGCCAAGGGAGATTACACACCACCAGATTCTGAAAAGAGGAAATTTGGTACCATTGTTTTTGCTGCTCTTAGCATGCCAGTTACTGAAATTCAAGGCATCCTCAATAAATTGGCCCAGAGTAATCCCAAGATTGACGTATTCCTTAAAGACAAACGTTTAGAGAATCTTAATCGAGCTCATTTGACTCTTGCCCACAAGAGAAGTCATGGCGTAAAAGCTGTAGCTGATTATGGTATCTATCTTAATAAAGAGGTGCCAGTGGAGTTGACAGCATTGCTCTTCTCAGATAAAATGGCTGCATTTGAAGCTTGTCCCGGGTCGGTGGATGGTGAAAAGATAGTTTCAAAAAATGAGTGGCCTCATGTTACCTTATGGACTGCTGAAGGGATTGCAGCCAAGGAGGCTAACTTGTTACCACAGTTGCTTGCAGAGGGGAAAGCAAATCGGATTGACTTCAATCCCCCCATCAATATATCTGCCACAGTTAACTTTTATTGA 3504 0.4229 MSAPQRFLCTFSHAIPLSSALSTFKPRPFVFLPFAHSNRTLAPSLSSMPRNQRSGAQVARRWKEKGKAEGQLSAAGDAGAAATAAETVTNRLAGMSIGENSGRTAAQGSIAIWKPKSYGTASGGTVTEAENGAGVAASVASPQKSSSSGLSKIFRGNLLESFTVDNSTYTRAQVRATFYPKFENEKSDQEVRTRMIELVSKGLATLEVSLKHSGSLFMYAGHEGGAYAKNSFGNVYTAVGVFVLGRMFREAWGTEASKKQAEFNNFLERNHMCISMELVTAVLGDHGQRPQEDYAVVTAVTELGNGKPKFYSTPEIIAFCRKWRLPTNHVWLFSSRKSATSFFAAYDALCEEGTATSVCKALDEIADISVPGSKDHVKAQGEILEGLVARLVSHDSSSHIERILKEFPPPPADGVALDFGPSLREICAANRSDEKQQIKALLESVGSSFCPDYTDWFGTDAADYHSRNADRSVLSKFLQAHPADYSTKNFDLNLNQEMVRLMREKRYPAAFKCYHNFHKVDAMSSDSLFYKMVIHVHSDSAFRRYQKELRLKPGLWPLYRGFFVDINLFKANKENAAEISKNNVNEIGNGSSGKDDLADEDANLMVKLKFLTYKLRTFLIRNGLPILFKEGPGAYKAYYLRQMKIWGTSSAKQRELSKMLDEWAVYIRRKCGNRQLSSSSYLSEVEPFLEQFAKRSPQNQALIGSAGNLVRTEDFLAIVDGGQDEEGDLVAEREIALPGSTISVKDTVPKYEGLIVFFPGIPGCAKSALCKELLNAQGELGDDRQVHSLMGDMIKGKYWQKVAEERRKKPTSIMLADKNAPNEEVWKLIEDMCHKTRASAVPVVPESEGTDSNPYSLDALAVFMYRVLQRVNHPGNLDKASPNAGYVLLMFYHLYEGRSRKEFEGDLIERFGSLVKMPLLKSDRNPLPEAVQSILEEGIDLYKLHTKRHGRLESTKGSYGKEWIKWEKQLRETLSGNAQYFNSIQVPFEFAVKQVLEQIRNIAKGDYTPPDSEKRKFGTIVFAALSMPVTEIQGILNKLAQSNPKIDVFLKDKRLENLNRAHLTLAHKRSHGVKAVADYGIYLNKEVPVELTALLFSDKMAAFEACPGSVDGEKIVSKNEWPHVTLWTAEGIAAKEANLLPQLLAEGKANRIDFNPPINISATVNFY 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00742 1167 PANTHER TRNA LIGASE 1 109 1151 IPR038837 GO:0003972|GO:0006388
Cca04g00742 1167 PANTHER TRNA LIGASE 1 109 1151 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00742 - - gmx:100815563 2098.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00742 04 7428213 7451150 Cca04g00742 04 7428213 7451150 ECH