Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca04g00733 | ATGGCGGCGTCGCGAATCGTAGCCCATCCTCCGTCCTATCTCAGCCGTCAATCTCCGCCGTCGGACGCCGTGCCGTCCCTCAACCTCACACTTCACCCAAAACGGTACCGTAACCTCGGCCGACGTCGTTTCCAGAGATCCACTCGCTCTTCCTCGTACCTTTTATTAATCCACGCTTTCCCCTTTCCGTTTTCGTTGTTGCTATTATTATTATCGATGCCTTTTGCGATTCATTTTTCAGGGCCTTTGACATCGACTCAGTTATCTGCTTCAGTTTCCGATGGTTCTCGGCTTCGTGTTGCGTATCAGGGGGTTCGCGGTGCTTACAGCGAGTCAGCAGCACAGAAGGCCTATCCAAATTGTGAAGCTGTGCCTTGTGAACAGTTTGACACTGCTTTTGAGGCTGTTGAAAGGTGGCTTGTGGATAGAGCAGTTTTGCCAATTGAGAATTCTTTAGGAGGGAGCATCCATAGAAATTATGATCTTTTACTCCGGCACAGTTTACATATAGTAGGAGAAGTAAAATATGCAGTCCGTCACTGTTTGATGGCCAACCATGGTGTTAAACTTGAGGATTTGAAGCGGGTTCTAAGTCACCCACAGGCTCTTGCTCAATGTGAGAACACACTAACAAAATTCGGATTGGTGCGAGAAGCAGTTGATGACACAGCTGGTGCTGCTAAGCATGTCGCCTTCCACAAACTACAAGATGCAGGAGCAGTTGCTAGTTCTGCTGCTGCAAAGATCTATGGCTTGAATATACTTGCTCAGGACATTCAGGATGATAGTGATAATATCACCCGATTTTTAATGCTAGCACGAGAACCTATAATTCCGGGCACTGATAGGCCATTTAAGACAAGCATAGTGTTTTCTTTAGAAGAGGGTCCAGGGATACTTTTCAAGGCCCTTGCTGTTTTTGCTTTGCGTCAGATTAACCTAACAAAGATTGAGAGTCGTCCTTTGCGTAACCAACCTCTAAGAGCATCAGATGATAGCAACAATTCCAAGTACTTTGATTATCTTTTCTATGTTGATTTTGAAGCATCAATGGCTGATCAGAGTGCACAAAATGCCCTAAGGCATCTAAAGGAATTTGCTACATTCTTGCGAGTGCTAGGGAGCTATCCTGTGGACACCAGCACGTAA | 1149 | 0.4587 | MAASRIVAHPPSYLSRQSPPSDAVPSLNLTLHPKRYRNLGRRRFQRSTRSSSYLLLIHAFPFPFSLLLLLLSMPFAIHFSGPLTSTQLSASVSDGSRLRVAYQGVRGAYSESAAQKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHSLHIVGEVKYAVRHCLMANHGVKLEDLKRVLSHPQALAQCENTLTKFGLVREAVDDTAGAAKHVAFHKLQDAGAVASSAAAKIYGLNILAQDIQDDSDNITRFLMLAREPIIPGTDRPFKTSIVFSLEEGPGILFKALAVFALRQINLTKIESRPLRNQPLRASDDSNNSKYFDYLFYVDFEASMADQSAQNALRHLKEFATFLRVLGSYPVDTST | 382 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca04g00733 | 382 | SUPERFAMILY | ACT-like | 269 | 378 | IPR045865 | - | |
| Cca04g00733 | 382 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cca04g00733 | 382 | Gene3D | - | 93 | 182 | - | - | |
| Cca04g00733 | 382 | PANTHER | PREPHENATE DEHYDRATASE P PROTEIN | 81 | 381 | - | - | |
| Cca04g00733 | 382 | ProSitePatterns | Prephenate dehydratase signature 2. | 314 | 321 | IPR018528 | GO:0004664|GO:0009094 | |
| Cca04g00733 | 382 | CDD | PBP2_Ct-PDT_like | 99 | 276 | - | - | |
| Cca04g00733 | 382 | ProSiteProfiles | Prephenate dehydratase domain profile. | 99 | 274 | IPR001086 | GO:0004664|GO:0009094 | |
| Cca04g00733 | 382 | Gene3D | - | 281 | 380 | - | - | |
| Cca04g00733 | 382 | SUPERFAMILY | Periplasmic binding protein-like II | 99 | 280 | - | - | |
| Cca04g00733 | 382 | PANTHER | AROGENATE DEHYDRATASE | 81 | 381 | - | - | |
| Cca04g00733 | 382 | CDD | ACT_CM-PDT | 286 | 377 | - | - | |
| Cca04g00733 | 382 | ProSiteProfiles | ACT domain profile. | 288 | 377 | IPR002912 | - | |
| Cca04g00733 | 382 | Gene3D | - | 183 | 262 | - | - | |
| Cca04g00733 | 382 | ProSitePatterns | Prephenate dehydratase signature 1. | 250 | 272 | IPR018528 | GO:0004664|GO:0009094 | |
| Cca04g00733 | 382 | Pfam | Prephenate dehydratase | 100 | 276 | IPR001086 | GO:0004664|GO:0009094 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca04g00733 | Cca-Chr4 | 7299007 | 7304537 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca04g00733 | K05359 | - | gmx:100787759 | 622.854 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca04g00733 | 04 | 7299007 | 7304537 | Cca04g00733 | 04 | 7299007 | 7304537 | ECH |