LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca04g00725	ATGACCACATACAGAGGAGCAAGAAATACGTGTACCACAGACCCAAACACTGGAACCAGTTGCGACAAAACAGAAGGCAGAGGGGAGGGGGCAATTCCACGCCTTCTCTCTCTTATAAAGACACCCTGTGGTTTTTCTCTACCCTTCTTAACTTTTTGCCCTCTCTCTCCTTCTCCGTCTTCGCAAACAATCTCCTCCTCACAGTTTCGTCTTCTCGATCTCACCACTgcaatcatgagtgacgaaggagaaagaacttgtcccctctgtgctgaagagatggatttgacagatcagcagttgaagccttgcaaatgtggttatgagATCTGTGTCTGGTGCTGGCACCACATAATGGAAATGGCTGAGAAGGATGACACTGAGGGGCGATGCCCCGCATGTCGTTCTCCTTATGATAAGGAGAAGATTGTTGGGATGGCTGCAAGCTGTGAGAGATTGGTGAATGAAATTAATATGGAGAAAAAGATGAAGAATCAGAAATCAAAGTCTAAACCATCTGATGGGCGTAAGCAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATAGTTGGATTGCCTCTAAATCTTGCAGATGAAGATCTTCTTCAGCGGAGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCGATGTCTCGAACAGCAGCTGGTGTCATTCAACAGTTTCCAAATGATACTTGCAGTGTATATATAACTTATTCAAAGGAAGAGGAAGCTATTCGTTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCATTAAGGGCTTGTTTTGGAACTACAAAATATTGCCATGCATGGCTCCGAAATGTGCCTTGCAGCAATCCGGATTGTCTATATCTGCATGAGATTGGCTCTCAAGAAGATAGTTTTACTAAAGATGAAATAATTTCTGCATACACTAGTCGAGTTCAACAAATCACCAGTGCCACTAATAATATGCAACGGCGGTCAGGGAATGTATTACCTCCTCCTATGGATGACAGTATGAATAATTCTTCTGCAAAGCCTATTGTGAAAAATGCTTCAAGTCAGAACTCTGTTAGCACTGTAAGAGGTTCACCACCGAATGGAATCTATGGGAGGCATATTGCCCTTCCGGCTAGTGCTGCATGGGGTACTCAGACCACGAATAGTCAGCCACTTGCAGGAGGTCTATCATATTCAAATGGGCCATCCAAGCCAAAGCCTGATACAGGCAGCAGCACACTAGCCTTTTCCGCAGCTGTTACAGGCTCAATTCAGACTTCATCAGATGTTACAAAGAGGCCACCATCGAGTGATGGGAGTCATAGTATGACACCTAGAGTGAAAAGTGAATTATTGAAACCTGTTAAACAATACAACAATAGTGTGGACAGTCTGGTTAGTGCAGGAGAAAAAACTTCAGCTTCTGATGTTTCTCCTGTGCCTGTGAATTTGAACAGTCAGTTGTCTTCTCTACCATTGTCCCGAGATAGTGATGGCAATTGTACCACAGCGAACACAATAATTTCTACCAACATTACTGGACAGGCTTGTAGCTCTGATCCTCAGGAAGCAATGGCTGCTACCAATGAAGAGATTCAGAATTTGTCCAGTGAGTTGTCCTCAATTAGCGTTGATAGGAATGCTGAACATTGCAGTATAACCAAACCTAATAGCCCATCTACTGATCATGTCTTGATTAAATCTCCTCAAATTCAAGGATCACAATATACTGTTGACAGATTTAAAGATGTAATAACTACAAATGTGGCTGGTAAAGCTACATTGGATAATGCGGTTTGTAATTCGAGGGAACAATGTGATTGGAAATTAGATTCTCAATCTCTAGTAGTATCAGATACTGCTGAAATTGATGATGTAACATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTGTTTGTCGTACTTATTTGCCAAAGTCAACCAGTTTCCTTCATGCATCAAATCATTCTAGCCCTCCTCTTCTGCAGCATGGTGAACTATGTGCTGCCGTAAATGCAGGTTCTCTCTCTGCCAATGACAGAATTCGGGATGAACCTATATTACATACATCTAATATATTATGTAATGGCTACCCTGAGAAATTGGTCAGCAGCAGCTCCTATGGTCTGCTTCACAGTGAAAGAAATGGGCATAACATTCAAAGATTAGTTGGTGAAGAAGTTAATGCTGGACATGATGCTGCTATGGATAAGGGTGAAAATAGTATAATTTCAAATATATTGTCCATGGATTTTGATGCCTGGGATGACACACTAACATCACCTCATAATTTAGCAAAGTTGTTGGGTGACAATACTGATAACCAGTCTGGTCCTTTAAAAAAATCCAGTTCTTGGAAAGTTCCCAATAACAACCAATCAAGGTTCTCTTTCGCAAGGCAGGAGGAATCCAAATTCCAAATGTTTGATGCTCATGCATCTTATGGTGTCAGCCAGCAACAGCCAATCATCCAGAATTTTTCAGAAAGAGACTTATATATGGATAAGTTGGGCATTGCAAATGGATTTCCTTCCAGTAACTTTGAGGAAGCTGAAAATATGGGCAGTGGTCATTCCATTGCATCTTCTAATAAGTTTTCTGCCATTTCAAGAGCACAAGTTTCAGCTCCACCAGGATTTTCAATTCCAAGCAGGCCTCCACCGCCTGGCTTTTCTTCCCATGAGAGAGTGGAGCACGCCTTTGACTCCATTTCTGGGAATTCTTTGCTCGACCATTCTTCCCTTTTGAGAAATTCATATCAGACACCTTCAGTTGGAAATCTTGGTAGCACAGGGGACATTGAATTTATGGACCCTGCTATTTTGGCAGTTGGCAAAGGGAGACTTCAAGGTGCACTGAACAGCCCAACACTGGACATGCGATCTAATTTTATGTCACAATTAAATTACTTTGAAAATGATGCCAGACTACAATTACTGATGCAAAGATCTCTCTCACCACAGCAAAACCATAGATTTTCTGAAATTGGGAATAATTTTTCTCAACTTGGTGATTCTTATGGTCTTTCTTCAAGGTTAGATCAATCACAAGTCAGTAATCTAGGTCCATTTCAGCAGCTGTCTCTGCAGCAGTCTGCAAATTCAGTATTGTCAAATGGGCAATGGGATGGGTGGAATGAGATGCAGGGTGGAAATGGTTTGGGTGTGGCTGAGCTTTTGAGAAATGAAAGACTTGGATTCAATAAATTTTACTCAGGATATGATGATTCGAAATTTCGGATGCCAAATTCTGGGGATCTTTACAACAGAACATTTGGGATGTGA	3297	0.4025	MTTYRGARNTCTTDPNTGTSCDKTEGRGEGAIPRLLSLIKTPCGFSLPFLTFCPLSPSPSSQTISSSQFRLLDLTTAIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAEKDDTEGRCPACRSPYDKEKIVGMAASCERLVNEINMEKKMKNQKSKSKPSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTSRVQQITSATNNMQRRSGNVLPPPMDDSMNNSSAKPIVKNASSQNSVSTVRGSPPNGIYGRHIALPASAAWGTQTTNSQPLAGGLSYSNGPSKPKPDTGSSTLAFSAAVTGSIQTSSDVTKRPPSSDGSHSMTPRVKSELLKPVKQYNNSVDSLVSAGEKTSASDVSPVPVNLNSQLSSLPLSRDSDGNCTTANTIISTNITGQACSSDPQEAMAATNEEIQNLSSELSSISVDRNAEHCSITKPNSPSTDHVLIKSPQIQGSQYTVDRFKDVITTNVAGKATLDNAVCNSREQCDWKLDSQSLVVSDTAEIDDVTSFDNQRLKDPEVVCRTYLPKSTSFLHASNHSSPPLLQHGELCAAVNAGSLSANDRIRDEPILHTSNILCNGYPEKLVSSSSYGLLHSERNGHNIQRLVGEEVNAGHDAAMDKGENSIISNILSMDFDAWDDTLTSPHNLAKLLGDNTDNQSGPLKKSSSWKVPNNNQSRFSFARQEESKFQMFDAHASYGVSQQQPIIQNFSERDLYMDKLGIANGFPSSNFEEAENMGSGHSIASSNKFSAISRAQVSAPPGFSIPSRPPPPGFSSHERVEHAFDSISGNSLLDHSSLLRNSYQTPSVGNLGSTGDIEFMDPAILAVGKGRLQGALNSPTLDMRSNFMSQLNYFENDARLQLLMQRSLSPQQNHRFSEIGNNFSQLGDSYGLSSRLDQSQVSNLGPFQQLSLQQSANSVLSNGQWDGWNEMQGGNGLGVAELLRNERLGFNKFYSGYDDSKFRMPNSGDLYNRTFGM	1098

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca04g00725	1098	MobiDBLite	consensus disorder prediction	338	367	-	-
	Cca04g00725	1098	SUPERFAMILY	RING/U-box	78	144	-	-
	Cca04g00725	1098	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	188	274	IPR000504	GO:0003723
	Cca04g00725	1098	SUPERFAMILY	RNA-binding domain, RBD	182	268	IPR035979	GO:0003676
	Cca04g00725	1098	Pfam	RING/Ubox like zinc-binding domain	87	139	-	-
	Cca04g00725	1098	SMART	rrm1_1	189	270	IPR000504	GO:0003723
	Cca04g00725	1098	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	190	268	IPR000504	GO:0003723
	Cca04g00725	1098	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN	72	1098	-	-
	Cca04g00725	1098	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	76	155	IPR013083	-
	Cca04g00725	1098	MobiDBLite	consensus disorder prediction	338	368	-	-
	Cca04g00725	1098	SMART	rrm2_1	189	270	IPR003954	GO:0003676
	Cca04g00725	1098	MobiDBLite	consensus disorder prediction	396	456	-	-
	Cca04g00725	1098	CDD	mRING-HC-C4C4_CNOT4	87	136	IPR039515	-
	Cca04g00725	1098	PANTHER	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	72	1098	IPR039780	GO:0004842\|GO:0030014
	Cca04g00725	1098	Gene3D	-	189	270	IPR012677	-
	Cca04g00725	1098	ProSiteProfiles	Zinc finger RING-type profile.	87	135	IPR001841	-
	Cca04g00725	1098	CDD	RRM_CNOT4	183	282	IPR034261	-
	Cca04g00725	1098	MobiDBLite	consensus disorder prediction	396	447	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca04g00725	Cca-Chr4	7235502	7243020	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca04g00725	K10643		-	gmx:100801880	1792.32

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca04g00725	04	7235502	7243020	Cca04g00725	04	7235502	7243020	ECH