Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00705 ATGGACGACGAATTGCTCGAGCTGCAGCGACAATTCGAGTTCGCTCAGCAAGCCAAGTCGAGCATTCGATTATCGGAGCGAAACGTCGTCGAATTAGTCCAAAAACTACAGCAACTACAAATCATCGATTTCGAGCTTCTCCACACTGTCTCCGGCAAAGAGTACATCACTCTCGATCAACTGAGGAACGAGATGGTGTCTGAGGTGAAGAAACTAGGGCGCGTTTCGTTGATTGATCTCGCTGACGCTACTGGAGTTGACTTGTTCTACGTGGAGAAGCAGGCTCAGAGCGTAGTAACGGAGCACCGAGAACTGATGTTGACTCAAGGAGAAATCATGTCGGAGTCGTATTGGGACTCAATCGCGGAAGAGGTTAACGAGAGGCTTCAGGAATGTAGTCAGGTTGCGCTGACGGAACTCGCGGCGCAATTGAACGTAGGTTTGGACTTAGTTGCGTCCGTATTGGAGCCGCGCCTTGGAACAATTGTGAAAGGAAGGCTTGAAGGTGGCCAGTTGTATACTCCTGCCTATGTGGCTCGTGTTGGTGCCATGGTTCGTGGCGCTGCACGGGGCATCACGGTGCCGACGAATTTGACGGCAGTGTGGAGCTCGTTGCAGCAGTTGCTGCAAGAGATTGATGGAACTAGTGGATTGGCAGTTGAAGGATCTTTCTTCCAGTCGTTGTTTAATGGACTTGTGAAGGAAGGCCAGGTTCTAGGGTCGGTTCGTGCAGGAGTACATTGGACACCAGCTGTATTTGCTGTTGCTCAAAAGGAGTTTGTGGATTCATTCTTTTCACAGAATTCTTTTATCACCTATGAGGCTCTGCACAAACTTGGAATTCCCCAGCCCATTCAATTTTTGCAGTCCAGATATCCTGAAGGAAAACCTCTAGTTACAACATTTGTTCATCCATCTATGATTGAGATGCTAGATGCTTCTACTGAGGATGCTCTTGACCGTGGTAGCTGGAGTGATTCTCTTTCCTTATTGCCCTCATCTTTTACACCTCAAGATGCATCTAAAATGTTGTCCCTCTGTCAATCTGTTCAAAATGCTCTTAAGTGTCACAAAGCACACATTTTTGGGGATTTTTATGTGATGAGTAGCAGCTTTATAAAGGACATCTGTGATCGTATTGTGAAAGAATTGGAGACATTAGGTGTTTCAGGGTCTGCTGGAATTACAATGCCTGGTGATTTTCAAGTACCCAACGAAGCTAAAGTAGGGCATGATTCAAGCAGGTTGAATGAGTCCAATGAGATCATGGCAAGTGATGGTGGTGCCAACAGGCATGCTGATAAAGGATCAAAGAAGAAAAAGGGGAAATCCGCTGGGAATGCAGTGGCAAATCTATCTGAAAGTGGTGCAGATAACCAGGAACAGACTTCGACAAAATCTAAGAAAAGCCAGAAACGGGGTAAGGATACATCTTCACAAATGTCAGTTACAAAGACAGGTTCTAGGAAAGAATCAGTTAAAATGAAAGAGGATAATCTCAGTCCCTCGGAAGAATGGATCATGCAGAAAATTACAACATTGGTTTCTGATTTCGAAGAACAAGGTATAGATGATCCTGAAACAATTCTTAGGCCTTTGGCTAACCAATTAAGGCCTACAATAATCAGTTCTTGGATGGAGAAAAGAAAGGCATTGCTTACAAACAATGCAGAAAGAATGAAACGTTTGCTTGATAATTTGCAGAAGAAACTTGATGAGTCTTTCTTAAACATGCAGCTGTATGAAAAAGCTTTAGAGTTATTTGAAGATGATCAATCAACTTTTGTTGTTTTGCATAGGCATTTACTTAGGACAGTAGCAGCTCCTATGGTGGATATTCTTCTTCGTAACCTGGACGAGCACAACAAATTAAAGAATGGACTTGAGGTGCAGGAAACTTCAAATTCTGAATCTGTGTGTCTTAGTCCTGGAGACAGAACTGCAATTTGCAAGAGTTTTCCAGGATCTCTTGCAAGTAGGGCTCTTGCTGTTGTCGAAGCATTGGAAGGAAAGAGCGTGGAGATATTCATGGCTGCTTTTAGAATGGTAACTGAAGAAAGTGGGTTGCCTTTGAAAAATCTTGACAAGAAACTAGAAAGAACACTTTTACATTCCTATCGTAAGGAATTGACATCTCAAGTTTCTGCTGAGACTGATCCTGTATCACTTCTGGCAAAAGTTGTCTCTTTACTATATATCCAAGTTTACCACAAAGCTCTTCAAGCCCCTGGAAGGGCCATTTCTGCTGCTATTTCCCACTTAAAGGATAAGCTAGACGAGTCAGCGTACAAGATTTTAACTGATTATCAAACTGCCACAGTGACTCTTTTGGCACTAATAGCAGCTTCACCCAGTGATGAAGAAGATTGTGCATCTGATAGGATTTTGAGTAAAAGGGAGCTTCTAGAGGGCCAAATGCTGCACCTCAAAAGCTTGGTTTTGAGCAGCTCACAATCTTAA 2460 0.4346 MDDELLELQRQFEFAQQAKSSIRLSERNVVELVQKLQQLQIIDFELLHTVSGKEYITLDQLRNEMVSEVKKLGRVSLIDLADATGVDLFYVEKQAQSVVTEHRELMLTQGEIMSESYWDSIAEEVNERLQECSQVALTELAAQLNVGLDLVASVLEPRLGTIVKGRLEGGQLYTPAYVARVGAMVRGAARGITVPTNLTAVWSSLQQLLQEIDGTSGLAVEGSFFQSLFNGLVKEGQVLGSVRAGVHWTPAVFAVAQKEFVDSFFSQNSFITYEALHKLGIPQPIQFLQSRYPEGKPLVTTFVHPSMIEMLDASTEDALDRGSWSDSLSLLPSSFTPQDASKMLSLCQSVQNALKCHKAHIFGDFYVMSSSFIKDICDRIVKELETLGVSGSAGITMPGDFQVPNEAKVGHDSSRLNESNEIMASDGGANRHADKGSKKKKGKSAGNAVANLSESGADNQEQTSTKSKKSQKRGKDTSSQMSVTKTGSRKESVKMKEDNLSPSEEWIMQKITTLVSDFEEQGIDDPETILRPLANQLRPTIISSWMEKRKALLTNNAERMKRLLDNLQKKLDESFLNMQLYEKALELFEDDQSTFVVLHRHLLRTVAAPMVDILLRNLDEHNKLKNGLEVQETSNSESVCLSPGDRTAICKSFPGSLASRALAVVEALEGKSVEIFMAAFRMVTEESGLPLKNLDKKLERTLLHSYRKELTSQVSAETDPVSLLAKVVSLLYIQVYHKALQAPGRAISAAISHLKDKLDESAYKILTDYQTATVTLLALIAASPSDEEDCASDRILSKRELLEGQMLHLKSLVLSSSQS 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00705 819 Coils Coil 611 631 - -
Cca04g00705 819 MobiDBLite consensus disorder prediction 448 464 - -
Cca04g00705 819 PANTHER E3 UFM1-PROTEIN LIGASE 1 1 818 IPR018611 GO:0061666|GO:0071569
Cca04g00705 819 Pfam E3 UFM1-protein ligase 1 4 288 IPR018611 GO:0061666|GO:0071569
Cca04g00705 819 Coils Coil 550 584 - -
Cca04g00705 819 MobiDBLite consensus disorder prediction 393 501 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00705 1 783 EF-hand Containing Proteins AT3G46220 64.204 0.0 965
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00705 K22755 - gmx:100808087 1365.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00705 04 6946742 6955426 Cca04g00705 04 6946742 6955426 ECH