Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00695 ATGATCCATCGCATACCCAAAACGATTAATCCAAATCCACTGCTCCATTATGCTCACAATCAATCCCTATTCCACAGCCACAAACCTCGACCCCATGAAAGGCCAACTCCGAAGTTTCGCAAGCGCATTCCTTTCGTCTCCCAAGTCAAAACAGTGCAAGACCCAGAAGAAGCCTTGTCTCTCTTTCACCGTTACAAGGAACAGGGTTTCCGCCACTATTACCCTTCCTATGCCGCTTTGCTCTACAAACTCGCTCGTTCCAGAAACTTCGAAGCCGTTGAAACCATTCTCGCCCACATGAGAGACACCGAATTGCAATGTAGAGAGAGCGTTTTCATTGCTCTCTTTCAACATTATGGTCCTCAAAAAGCTTTTGAACTCTTCAACAGAATGCCCCAGTTCAACTGCGTCCGCACGATTCAGTCTTTCAATGCTCTTCTCAATGTTCTAGTTGACAACAACCTGTTTGATAAGGCCAATCATGTTTTTGGACGGTCCTATGAAATGGGTTTTCGTCCAAACACGGTGACATTCAATATAATAATGAAAGGGTGGTTGGCGAAGGGTGAGTGGGAGAAAGCATGCGAGGTGTTTGATGAAATGCTTCAGAAGAGAGTGCAGCCTAGTGTTGTCACTTATAATAGTCTCATTGGATTTTTATGCAGGAAGGGTGATTTAGATAAAGCAATGACCTTGCTTGAGGACATGAGACAGAAAGGAAAGCATGCGAATGAAGTAACCTATGCGCTGTTGATGGAGGGTTTGTGTTCAGCGGAGAAGTACGAGGAGGCTAAGAAGCTGATGTTTGATATGGCGTATCGCGGGTGTAAAGCTCAGCCGGTGAATTTTGGTGTTTTGATGAACGATTTTGGGAAGAGAGGGAAGGTTGGGGAGGCCAAGTCTTTGCTCCATGAGATGAAGAAAAGGCGGCTTAAGCCGGATGTTGTAACGTACAACATATTGATAAATTATCTTTGCAAGGAAGGTAAGGCAGTGGAAGCTTACAAAGTATTAACTGAGATGCAGATTGGGGGATGTGAGCCTAATGCAGCTACTTACAGGATGATGGTTGATGGTTTGTGTCAGATTGGGGATTTTGAGGTAGGTTTGAGTGTTTTGAATGCAATGCTTACAAGTAGACATTGTCCACGTTCGGAGACATTTAATTATCTGGTTGTTGGCCTGTTGAAATGTGGGAATATTGATGGTGCTTGCTTTGTTTTGGAAGAGATGGAGAAGAGAAAGGTAGAACTTGATTTGAAGAGCTGGGAAATTATTATAAAGTCTGTCTGTAGTGAGGATAAGGGTGTTAGTGAGCTTATGAAAGTACTTGCATCTCTGAATATCTAA 1350 0.4348 MIHRIPKTINPNPLLHYAHNQSLFHSHKPRPHERPTPKFRKRIPFVSQVKTVQDPEEALSLFHRYKEQGFRHYYPSYAALLYKLARSRNFEAVETILAHMRDTELQCRESVFIALFQHYGPQKAFELFNRMPQFNCVRTIQSFNALLNVLVDNNLFDKANHVFGRSYEMGFRPNTVTFNIIMKGWLAKGEWEKACEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDLDKAMTLLEDMRQKGKHANEVTYALLMEGLCSAEKYEEAKKLMFDMAYRGCKAQPVNFGVLMNDFGKRGKVGEAKSLLHEMKKRRLKPDVVTYNILINYLCKEGKAVEAYKVLTEMQIGGCEPNAATYRMMVDGLCQIGDFEVGLSVLNAMLTSRHCPRSETFNYLVVGLLKCGNIDGACFVLEEMEKRKVELDLKSWEIIIKSVCSEDKGVSELMKVLASLNI 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00695 449 Gene3D Tetratricopeptide repeat domain 345 446 IPR011990 GO:0005515
Cca04g00695 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Cca04g00695 449 SUPERFAMILY HCP-like 52 235 - -
Cca04g00695 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Cca04g00695 449 PANTHER OS05G0548600 PROTEIN 25 445 - -
Cca04g00695 449 Gene3D Tetratricopeptide repeat domain 271 343 IPR011990 GO:0005515
Cca04g00695 449 Gene3D Tetratricopeptide repeat domain 204 270 IPR011990 GO:0005515
Cca04g00695 449 Gene3D Tetratricopeptide repeat domain 40 203 IPR011990 GO:0005515
Cca04g00695 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Cca04g00695 449 TIGRFAM PPR: pentatricopeptide repeat domain 387 419 IPR002885 -
Cca04g00695 449 TIGRFAM PPR: pentatricopeptide repeat domain 246 277 IPR002885 -
Cca04g00695 449 TIGRFAM PPR: pentatricopeptide repeat domain 316 350 IPR002885 -
Cca04g00695 449 TIGRFAM PPR: pentatricopeptide repeat domain 352 383 IPR002885 -
Cca04g00695 449 TIGRFAM PPR: pentatricopeptide repeat domain 211 241 IPR002885 -
Cca04g00695 449 TIGRFAM PPR: pentatricopeptide repeat domain 285 315 IPR002885 -
Cca04g00695 449 TIGRFAM PPR: pentatricopeptide repeat domain 142 175 IPR002885 -
Cca04g00695 449 TIGRFAM PPR: pentatricopeptide repeat domain 176 209 IPR002885 -
Cca04g00695 449 Pfam PPR repeat family 313 362 IPR002885 -
Cca04g00695 449 Pfam PPR repeat family 173 222 IPR002885 -
Cca04g00695 449 Pfam PPR repeat family 385 432 IPR002885 -
Cca04g00695 449 SUPERFAMILY TPR-like 186 341 IPR011990 GO:0005515
Cca04g00695 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Cca04g00695 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Cca04g00695 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Cca04g00695 449 Pfam PPR repeat 142 169 IPR002885 -
Cca04g00695 449 Pfam PPR repeat 283 310 IPR002885 -
Cca04g00695 449 Pfam PPR repeat 246 276 IPR002885 -
Cca04g00695 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Cca04g00695 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Cca04g00695 449 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 25 445 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00695 122 435 Miscellaneous Gene Families AT4G11690 29.299 7.89e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00695 - - gmx:100776556 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00695 04 6813504 6814936 Cca04g00695 04 6813504 6814936 ECH