Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00681 ATGTCGCTGAGTTCGAGTTCCAGGGGAAGAAGAATAACCACGGAGATTCAGATCCCGAAGAAATGGACCGACAGAGAAACCAGTCCAGAGAGAACCAAAGTCTGGGCCGAGCCCAAGCCCAAAACTCCCAGAAAAGTCTCCGTCGTTTACTATCTCTCCCGTAACGGCCAACTCGAGCACCCTCACTTCATGGAGGTTCCTCTCTCTTCGCCTCACGGACTCTATCTCAAAGACGTCATTAACCGCTTGAACTCTCTCCGAGGCAAAGCCATGGCCTCCATGTACTCTTGGTCCGCCAAACGGAGCTACAAAAACGGTTTCGTATGGCACGATTTGTCGGAGAACGATTTCATCTACCCGACGCAGGGGCAGGACTACATTCTCAAAGGATCGGAGATTGAGGAATCCGATTCGCCGGTGGTGATCACGAGGCGGCGCAACCAGTCGTGGAGCTCCATTGATTTGAACGAGTACCGAGTCTACAAGTCCGAATCGTTCGGTGACTCGGCGGGGAAACTCGGCGCCGACGcggcgacgcagacggaggacaagcggaggcggaggagggcggcgagggaggaagaagcgggagaGATTCAAGAGGAAAACGGAATTGAAGCGGAAATGGAGGGAAATAGGGTGGAGCACGTGACGCACGTGAGTTatgataataataataataataatCGCATTACGGAGCTGAGTAGGGAAGAGATCTCGCCTCCGCCGTCGGATTCGAGTCCCGAGACGCTGGAGACGCTGATGAAGGCGGATGGACGGCTCGGATTGCGGTCTTTGGAATCTGAGAAAGGGAATCTGACGGTTGAGAGTTGTCCTAGCGGGAGAATGAGAGCCTCGTCGGTTCTGTTGCAGTTGTTATCGTGCGGTGCTGTGTCTTTCAAAGAGTGTGGGGCAAACTCGGTGAAGGATCAAGGGTTCTCGTTGGTTGGTCACTACAAGTCCAGGATGCCCCGCGGAGCAGGGAATCATGCGGGGAAGGAAACGGGGACATCGATGGAAATTCCGGATTTGAGCGGGGTAAGGTTGGAAGATAAAGAATATTTTAGTGGAAGCTTGATCGAAACTAAGAAAGTGGAAATCCCTGCTTTGAAGAGGTCCTCTTCTTACAATGCCGATAGCGGTTCCCGGTTACAAATGGTGGAGCATGAAGAAGTAGTGAGGGCAAAGTGCATACCGCGGAAGTCTAAGACGCTACAAGCAAAGAAAGAAGAGGGTGCTTCCCCGCATATTATTAGCAATGGCCAACATGGTAGCAAAAGATTTGACGCACAGGCACAACAATAA 1305 0.4851 MSLSSSSRGRRITTEIQIPKKWTDRETSPERTKVWAEPKPKTPRKVSVVYYLSRNGQLEHPHFMEVPLSSPHGLYLKDVINRLNSLRGKAMASMYSWSAKRSYKNGFVWHDLSENDFIYPTQGQDYILKGSEIEESDSPVVITRRRNQSWSSIDLNEYRVYKSESFGDSAGKLGADAATQTEDKRRRRRAAREEEAGEIQEENGIEAEMEGNRVEHVTHVSYDNNNNNNRITELSREEISPPPSDSSPETLETLMKADGRLGLRSLESEKGNLTVESCPSGRMRASSVLLQLLSCGAVSFKECGANSVKDQGFSLVGHYKSRMPRGAGNHAGKETGTSMEIPDLSGVRLEDKEYFSGSLIETKKVEIPALKRSSSYNADSGSRLQMVEHEEVVRAKCIPRKSKTLQAKKEEGASPHIISNGQHGSKRFDAQAQQ 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00681 434 MobiDBLite consensus disorder prediction 418 434 - -
Cca04g00681 434 Pfam Protein SOSEKI, plant 46 136 IPR010369 -
Cca04g00681 434 Pfam Protein SOSEKI, plant 135 380 IPR010369 -
Cca04g00681 434 PANTHER OS01G0839200 PROTEIN 10 402 - -
Cca04g00681 434 MobiDBLite consensus disorder prediction 178 198 - -
Cca04g00681 434 MobiDBLite consensus disorder prediction 400 434 - -
Cca04g00681 434 MobiDBLite consensus disorder prediction 169 250 - -
Cca04g00681 434 MobiDBLite consensus disorder prediction 218 250 - -
Cca04g00681 434 MobiDBLite consensus disorder prediction 1 38 - -
Cca04g00681 434 MobiDBLite consensus disorder prediction 14 38 - -
Cca04g00681 434 PANTHER UPSTREAM OF FLC PROTEIN (DUF966) 10 402 IPR010369 -
Cca04g00681 434 PIRSF UCP031043 134 420 IPR021182 -
Cca04g00681 434 PIRSF UCP031043 14 144 IPR021182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00681 Cca-Chr4 6669383 6672685 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00681 - - gmx:100779732 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00681 04 6669383 6672685 Cca04g00681 04 6669383 6672685 ECH