Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00670 ATGGCACCAAAGCCAGAGAAGAAGCCAGCGGAGAAGAAGCCCTCGGAGGAGAAGAAGTCGACGGTGGCAGAGAAGGCTCCAGCGGCGGAGAAGAAGCCAAAGGCAGGGAAGAAGCTGCCGAAGGAGGGAGGAGCTGGCGGAGACaagaagaagaagagaagcaagaagaGTGTGGAGACATACAAAATCTACATCTTCAAGGTTCTGAAGCAGGTTCACCCAGACATTGGTATCTCAAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAATCTTCTAGACTTGCCCGCTACAACAAGAAGCCAACCATCACTTCAAGGGAGATCCAGACCGCGGTCAGGCTTGTGCTGCCCGGAGAATTGGCCAAACACGCCGTCTCCGAAGGTACCAAGGCCGTCACAAAGTTCACTAGCTCTTGA 447 0.5078 MAPKPEKKPAEKKPSEEKKSTVAEKAPAAEKKPKAGKKLPKEGGAGGDKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00670 148 PANTHER HISTONE H2B.1-RELATED 5 148 - -
Cca04g00670 148 PANTHER HISTONE H2B 5 148 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00670 148 MobiDBLite consensus disorder prediction 1 57 - -
Cca04g00670 148 PRINTS Histone H2B signature 61 79 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00670 148 PRINTS Histone H2B signature 80 100 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00670 148 PRINTS Histone H2B signature 102 119 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00670 148 PRINTS Histone H2B signature 119 132 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00670 148 PRINTS Histone H2B signature 132 145 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00670 148 SUPERFAMILY Histone-fold 40 148 IPR009072 GO:0046982
Cca04g00670 148 Pfam Core histone H2A/H2B/H3/H4 6 124 IPR007125 GO:0003677
Cca04g00670 148 Gene3D Histone, subunit A 22 148 IPR009072 GO:0046982
Cca04g00670 148 ProSitePatterns Histone H2B signature. 116 138 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00670 148 SMART h2b3 51 147 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00670 Cca-Chr4 6582165 6583012 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00670 K11252 - sspl:121741882 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00670 04 6582165 6583012 Cca04g00670 04 6582165 6583012 ECH