Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00669 ATGGCACCAACAAAGGCAGAGAAGAAGCCAGCGGAGAAGAAGCCCTCGGAGGAGAAGAAGTCGACGGTGGCAGAGAAGGCTCCAGCGGCGGAGAAGAAGCCAAAGGCAGGGAAGAAGCTGCCGAAGGAGGGAGGAGCTGGCGGAGACaagaagaagaagagaagcaagaagaGTGTGGAGACATACAAAATCTACATCTTCAAGGTTCTGAAGCAGGTTCACCCAGACATTGGTATCTCAAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAATCTTCTAGACTTGCCCGCTACAACAAGAAGCCAACCATCACTTCAAGGGAGATCCAGACTGCGGTCAGGCTTGTGCTGCCCGGAGAATTGGCCAAACACGCCGTCTCCGAGGGTACCAAGGCCGTCACCAAGTTCACTAGTTCTTGA 450 0.5067 MAPTKAEKKPAEKKPSEEKKSTVAEKAPAAEKKPKAGKKLPKEGGAGGDKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00669 149 PANTHER HISTONE H2B.1-RELATED 6 149 - -
Cca04g00669 149 PRINTS Histone H2B signature 62 80 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00669 149 PRINTS Histone H2B signature 81 101 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00669 149 PRINTS Histone H2B signature 103 120 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00669 149 PRINTS Histone H2B signature 120 133 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00669 149 PRINTS Histone H2B signature 133 146 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00669 149 PANTHER HISTONE H2B 6 149 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00669 149 Pfam Core histone H2A/H2B/H3/H4 1 125 IPR007125 GO:0003677
Cca04g00669 149 ProSitePatterns Histone H2B signature. 117 139 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca04g00669 149 SUPERFAMILY Histone-fold 41 149 IPR009072 GO:0046982
Cca04g00669 149 MobiDBLite consensus disorder prediction 1 58 - -
Cca04g00669 149 Gene3D Histone, subunit A 24 149 IPR009072 GO:0046982
Cca04g00669 149 SMART h2b3 52 148 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00669 Cca-Chr4 6566372 6566821 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00669 K11252 - sspl:121741882 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00669 04 6566372 6566821 Cca04g00669 04 6566372 6566821 ECH