Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00663 ATGTCAAGAGTGGCATTTTGCGTGTCTGCGGGTGCTGTTGTCATTGATAAAGATGAAGATCGTTCGGTTCCGGTCCCTCTTCCAAACCAACGATCTGCCACTGCGACAAACGAGACTCGGAAATTTAACGAAGGAGCATTCCATGGAAATCGGCGACGAACAAAACGAAGATCAATAACAATCTCAGAGCCTCAAAATTCGTTACATCAACTTTCGCTTCCACTCCTAATCTCCCAACCTGACACTTGCGTTTTTCTTTCAGAAACTGAAATGCCTTCAGTTTACTTGGGAGATAGGGTGGATAGTTCTAACTCGAGCATGAGCTCTAATTCTAAAGAAAGCAGTGTTGTTGTCACTGGGAAGAAAACATACAAAAAACTTCTGGTTGCATCACGGCCTAAAGGCTTTGCTCAGAAAAATTATGAACACCTTGTGTCATTAACCCATGGTAACTTTGGAAGCAGCACTGTGGGTCGTGTCACTCTTTTTTTACTCAAAGTTGCTGCATTAGAGACCGTCAGAAGATTCTCCAAGAGTAAATGTCCGATTGTATGGCGAGGTCTGCAAGGTCTTCAAATTCTTGTCTATCCACCGTTCAAATGGATTCAGAAGTGGGCACTCTTCAGGGGTTTGGTGAAAAGCATGCAGGCACTTTCGAGACCATTATTAGTCCTTTCGATTGCAACAGTCTTTACTGATCAACTGCAAAGTAGTGATGGAACCTCAGATTGTGTTACTGATTCCAATGATTCTGAACTATCGGCAGAATTATCTCCTGCGCAGGCTAATTTGAATACAAGTCCTCGTGAGATAGCTCCTGAAGTTTTAGAATATGAAAACTGGTTGACTCTACTCAAGAAAGAGCTGGAAAAACAAGGGATTAGTTTGCCAGAAAGAATCAATGATGATGAACTCCACAGATTTTACACAGCTTCTAATAACGACTTTTCATGCTTCTTTACTTCAATCAAGAAGACAATACGCTGGCGGGAAAGTTACAGATTTCTTTCAGTAGAAGAGCTGGAGGTGTGGTCAAATATGGTGTTCTGGCATGGATCTGATTTGTTGCACAGACCTTGCCTCATTGTAAGGCTTGGGATAGCTTGTAGCTCCTTGGCGTCTGAAGATAGACACCAATTTGCTCAGGCTGTTGTATCACAGGTAGAATATGGAGTCTTGCACTTGCTTGATGCAGACAACCCTCAAATTACAGTATTGGTGGACTGTGAAGGGTTATCTCCATTGAGAATTCCTATGAAAATGTTAAGATCATGTTCCTCCCTTCTGCAAAATCACTTTCCTAATCGTCTTGGTGGTTTGTTTATCATCCGACTTCCAGCAATTGTTCGTGTTATTGCCCAGACTTTTCTTCAGGTTTTAAAGCCAACTACCAGGAAGAAGTTGAAATTAGGGGGGGAGAGATATCAGAAGGTACTTTATGACAATTTGCCCACGCTACCATCATATCTTGGAGGCTGCTGCACTTGCATGAGATGTTCTAAAATGGGCAACTGGGATATGCTACAAAATCATGCGACTGGAACCAGCAGGATTGATAGGGTGGAGGATATCATTGACAATGAGGGTTTGCCATCACTGCATTCATCTAATGAATTAGATGGCCGCCAAATCAGCAATTCTGACCAGATGTTGAAAACTGCTATCATAAGTATTCTCATATTTTGGGTTTTCATAGCTCTTGGTGCTGGAATTTACAACCCTGGTAGTCGACAATTATCTCCGGTACGTAATCTATCTCTGACTCACTGGGGAATCAACTATGACTTATCCAATACTCTGAAATCAGTAACAGAGAGTACAGACAGACAGCTCTGTTCTCATCCAAGTTTGAAATATCACCTTCTCGTATCCTTAAAAAATCAAAACCACCCAAATCCTACTCCTACTCCACCTCTATCGTCATTTTTTCTTTTTCTGTTTCCAACAGGATTTGAGTTTCAGAGATTTTCCAAGTTCTTTCAGTCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGGTTTATTGGCTCTCACCTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTCATTGTTGCTGACAACTTCTTCACCGGATCTAAAGACAACCTTAAAAAGTGGATTGGCCATCCAAGATTTGAGCTAATTCGTCATGATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATTTTCTATAAGTACAATCCTGTAAAGACAATAAAGACAAATGTGATTGGAACGCTGAACATGCTTGGGCTTGCTAAGCGTGTGGGAGCAAGGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGTGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAACCCTATTGGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATTGAAATACGCATTGCAAGAATCTTTAACACATACGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCGTGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACCCGCAGTTTCTGCTATGTCTCTGACATGGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGGTGAATTTACAATGATTGAACTTGCCGAGAATGTGAAGGAGCTTATTAATCCAGGAGTGGAGATAAAGATGGTTGAGAACACTCCTGACGATCCTCGTCAGAGAAAACCAGACATAACAAAAGCAAAGGAATTGCTGGGCTGGGAGCCAAAGGTCAAGTTGCGTGATGGCCTTCCTCTTATGGAAGAGGATTTCCGTTTGAGGCTTGGGGTTCCCAAGAACAACTAA 2934 0.4206 MSRVAFCVSAGAVVIDKDEDRSVPVPLPNQRSATATNETRKFNEGAFHGNRRRTKRRSITISEPQNSLHQLSLPLLISQPDTCVFLSETEMPSVYLGDRVDSSNSSMSSNSKESSVVVTGKKTYKKLLVASRPKGFAQKNYEHLVSLTHGNFGSSTVGRVTLFLLKVAALETVRRFSKSKCPIVWRGLQGLQILVYPPFKWIQKWALFRGLVKSMQALSRPLLVLSIATVFTDQLQSSDGTSDCVTDSNDSELSAELSPAQANLNTSPREIAPEVLEYENWLTLLKKELEKQGISLPERINDDELHRFYTASNNDFSCFFTSIKKTIRWRESYRFLSVEELEVWSNMVFWHGSDLLHRPCLIVRLGIACSSLASEDRHQFAQAVVSQVEYGVLHLLDADNPQITVLVDCEGLSPLRIPMKMLRSCSSLLQNHFPNRLGGLFIIRLPAIVRVIAQTFLQVLKPTTRKKLKLGGERYQKVLYDNLPTLPSYLGGCCTCMRCSKMGNWDMLQNHATGTSRIDRVEDIIDNEGLPSLHSSNELDGRQISNSDQMLKTAIISILIFWVFIALGAGIYNPGSRQLSPVRNLSLTHWGINYDLSNTLKSVTESTDRQLCSHPSLKYHLLVSLKNQNHPNPTPTPPLSSFFLFLFPTGFEFQRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNFFTGSKDNLKKWIGHPRFELIRHDVTEQLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQVPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMIELAENVKELINPGVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRLRLGVPKNN 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00663 977 Gene3D - 663 969 - -
Cca04g00663 977 Pfam GDP-mannose 4,6 dehydratase 667 961 IPR016040 -
Cca04g00663 977 CDD UGD_SDR_e 664 968 - -
Cca04g00663 977 CDD SEC14 339 492 IPR001251 -
Cca04g00663 977 Pfam CRAL/TRIO domain 346 492 IPR001251 -
Cca04g00663 977 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 350 498 IPR001251 -
Cca04g00663 977 SMART sec14_4 342 495 IPR001251 -
Cca04g00663 977 Gene3D - 277 519 IPR036865 -
Cca04g00663 977 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 654 977 IPR044516 GO:0042732|GO:0048040|GO:0070403
Cca04g00663 977 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 654 977 - -
Cca04g00663 977 SUPERFAMILY CRAL/TRIO domain 345 497 IPR036865 -
Cca04g00663 977 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 658 968 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00663 Cca-Chr4 6517370 6531281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00663 666 960 Miscellaneous Gene Families AT4G00110 23.939 7.30e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00663 K08678 - gmx:100814843 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00663 04 6517370 6531281 Cca04g00663 04 6517370 6531281 ECH