Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00659 ATGTGTTTGGGACTTTGGGTGAACCCTGGAAGGTTCAAGGCCCTCTGGAATAGTTTATCCGGAATCCCCACTCCCCCCGAGTCTTGTCTGTGGATTCAGACTTTCAGACCATCTTTTCAGAATTTGTCCAAACCACAGAAAAACCAAACGTTCCCTACTTTTCCCGCTATACCAATTTTGCCCCTCACCATCAAAAATTTCAAAATTCAAAACTCCACTTTCAAAGGGCAACTCCGTCCTACAAAAAACGAAACACCCCGTTCCCACCTTTTGTTATTGGAAACTCACTTGAAAGTTGAAACACTGTCTATAAATAAATCTAAGATAAAACCCTTCCCAACACAACACAACACAACACAGTTTCATTCTTTTACTACTAAGGTACTACCCCAAGCCATGGCTCACTCACTCTTCCTATACTCATTCCTCATCCTGGCTGTCACCACCCTCTCCTCACCCACCGGTGCTCTTATCCTAACCCTCGTCAACAACTGCAACTACACCGTGTGGCCGGCCATCCAGCCCAACGCCGGCCACCCCAACCTGGGCGGCGGCGGCTTCACCCTCCACACGCTCACCCACCTCTCCATCCCCGTCCCGGACGCCCACTGGTCCGGCCGCGTCTGGGCCCGCACCGCCTGCGCCTACTCCGGCACCGCCTTCTCCTGCGCCACGGGCGACTGCGGCGGCCGCCTCCAGTGCAACGGCGCCGGAGGCTCCGCCCCCGCCACCCTGGCCCAGCTGGAGGTCCACCACGGCAACGGCGACTTCGCCTCCTACGGCGTGAGCCTCGTGGACGGCTTCAACGTCCCCATGACGGTGACTCCGCACGAGGGCCGAGGCGTGTGCCCCGTCGTGGGCTGCCGCGCCGACCTCCTCGCCACGTGTCCGGCCGTGCTCCAGCACCGCGTCCCCGCCGCCCACGGCCCCGTGGTGGCGTGCAAGAGCGGCTGCGAGGCCTTCCACACGGACGAGTTGTGCTGTCGGAACCACTTCAACAGCGCCCACACGTGTAAGGGCTCTGTTTACTCCTCCTTCTTCAAGCACGCGTGTCCCTCCACCTTTACCTTCGCCCATGACACGCCTTCGCTCATGCACCAGTGCTCCTCCCCCCGCGAGCTCAAGGTTATCTTTTGCCATTGA 1143 0.5871 MCLGLWVNPGRFKALWNSLSGIPTPPESCLWIQTFRPSFQNLSKPQKNQTFPTFPAIPILPLTIKNFKIQNSTFKGQLRPTKNETPRSHLLLLETHLKVETLSINKSKIKPFPTQHNTTQFHSFTTKVLPQAMAHSLFLYSFLILAVTTLSSPTGALILTLVNNCNYTVWPAIQPNAGHPNLGGGGFTLHTLTHLSIPVPDAHWSGRVWARTACAYSGTAFSCATGDCGGRLQCNGAGGSAPATLAQLEVHHGNGDFASYGVSLVDGFNVPMTVTPHEGRGVCPVVGCRADLLATCPAVLQHRVPAAHGPVVACKSGCEAFHTDELCCRNHFNSAHTCKGSVYSSFFKHACPSTFTFAHDTPSLMHQCSSPRELKVIFCH 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00659 380 SUPERFAMILY Osmotin, thaumatin-like protein 158 379 IPR037176 -
Cca04g00659 380 Pfam Thaumatin family 163 379 IPR001938 -
Cca04g00659 380 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 138 380 - -
Cca04g00659 380 CDD TLP-PA 158 379 - -
Cca04g00659 380 PANTHER OS03G0233200 PROTEIN 138 380 IPR001938 -
Cca04g00659 380 Gene3D Thaumatin 158 379 IPR037176 -
Cca04g00659 380 SMART tha2 159 380 IPR001938 -
Cca04g00659 380 PRINTS Pathogenesis-related protein signature 158 170 IPR001938 -
Cca04g00659 380 PRINTS Pathogenesis-related protein signature 207 218 IPR001938 -
Cca04g00659 380 PRINTS Pathogenesis-related protein signature 219 248 IPR001938 -
Cca04g00659 380 PRINTS Pathogenesis-related protein signature 370 379 IPR001938 -
Cca04g00659 380 ProSiteProfiles Thaumatin family profile. 156 380 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00659 Cca-Chr4 6489817 6491977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00659 159 379 Receptor kinase-like Gene Family AT5G38280 36.726 1.94e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00659 - - gmx:100818233 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00659 04 6489817 6491977 Cca04g00659 04 6489817 6491977 ECH