Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00613 ATGGCAAACTCTGTTTTATCCACTTCTCCAGTTGGGTCTGGAAGTCCTGTTAGGCACAATGAACTAAATATGCGTTTTGCTTCGGGAATGAGGAATTTAGCTGGGGTCATGGGACCTTGGCATGTAGATAATGGGAACATTGATGAAAGTTTTGCTTCTTCTCTGTTGGAAGAGTTTAAAAGCAATAAAACTAAGTGTTTTGAGCTCTCTGAAATTGCTGGTCATGTTGTTGAGTTCAGTGCGGATCAATATGGGAGCCGATTTATTCAGCAAAAGCTTGAAACAGCTACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCGCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCATCCCAAAGGAGAGAATTAGCCAACAAACTTCTTGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGGGTCATCCAGAAGGCCATCGAAGTTGTTGATTTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTAATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCATTCAGAAGTGTATTGAATGTGTCACTGAAGATGCAATACACTTTATTGTGTCAACATTTTTCGATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGTCGGGTGATACAGAGGGTATTGGAGCACTGCAAAGATCCTATAACTCAGCAGAAAGTTATGGATGAGATTTTAGGAGCAGTTAGCATGTTAGCTCAAGATCAGTATGGCAACTACGTTGTTCAGCATGTACTGGAACATGGGAAGCCTCATGAACGCTCTTCTATAATAAAGGAACTAGCAGGCAAGATAGTTCAAATGAGTCAGCAGAAGTTTGCTTCAAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAGCGCCAATTGCTAGTGAACGAGATGCTTGGCTCTACCGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAAGTGCTGGAAACTTGTGATGATCAACAACGCGAGCTGATTCTTTCACGGATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCACATTGTTGCACGTGTAGAAAAACTCGTTGCTGCTGGAGAAAGGAGAATTGCTGCTCAGTCTCCTCAACCTGCTTAG 1221 0.412 MANSVLSTSPVGSGSPVRHNELNMRFASGMRNLAGVMGPWHVDNGNIDESFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLASQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVTEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPITQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPQPA 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00613 406 ProSiteProfiles Pumilio RNA-binding repeat profile. 252 287 IPR001313 GO:0003723
Cca04g00613 406 SUPERFAMILY ARM repeat 54 388 IPR016024 -
Cca04g00613 406 SMART pum_5 71 106 IPR001313 GO:0003723
Cca04g00613 406 SMART pum_5 252 287 IPR001313 GO:0003723
Cca04g00613 406 SMART pum_5 215 251 IPR001313 GO:0003723
Cca04g00613 406 SMART pum_5 107 142 IPR001313 GO:0003723
Cca04g00613 406 SMART pum_5 330 365 IPR001313 GO:0003723
Cca04g00613 406 SMART pum_5 288 323 IPR001313 GO:0003723
Cca04g00613 406 SMART pum_5 143 178 IPR001313 GO:0003723
Cca04g00613 406 SMART pum_5 179 214 IPR001313 GO:0003723
Cca04g00613 406 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 1 399 - -
Cca04g00613 406 ProSiteProfiles Pumilio RNA-binding repeat profile. 288 323 IPR001313 GO:0003723
Cca04g00613 406 ProSiteProfiles Pumilio RNA-binding repeat profile. 179 214 IPR001313 GO:0003723
Cca04g00613 406 Pfam Pumilio-family RNA binding repeat 258 289 IPR001313 GO:0003723
Cca04g00613 406 Pfam Pumilio-family RNA binding repeat 338 367 IPR001313 GO:0003723
Cca04g00613 406 Pfam Pumilio-family RNA binding repeat 219 254 IPR001313 GO:0003723
Cca04g00613 406 Pfam Pumilio-family RNA binding repeat 190 213 IPR001313 GO:0003723
Cca04g00613 406 Pfam Pumilio-family RNA binding repeat 293 326 IPR001313 GO:0003723
Cca04g00613 406 Pfam Pumilio-family RNA binding repeat 147 180 IPR001313 GO:0003723
Cca04g00613 406 Pfam Pumilio-family RNA binding repeat 111 144 IPR001313 GO:0003723
Cca04g00613 406 Pfam Pumilio-family RNA binding repeat 75 109 IPR001313 GO:0003723
Cca04g00613 406 ProSiteProfiles Pumilio RNA-binding repeat profile. 143 178 IPR001313 GO:0003723
Cca04g00613 406 ProSiteProfiles Pumilio RNA-binding repeat profile. 71 106 IPR001313 GO:0003723
Cca04g00613 406 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 51 391 IPR033133 GO:0003723
Cca04g00613 406 ProSiteProfiles Pumilio RNA-binding repeat profile. 107 142 IPR001313 GO:0003723
Cca04g00613 406 ProSiteProfiles Pumilio RNA-binding repeat profile. 324 365 IPR001313 GO:0003723
Cca04g00613 406 Pfam Nucleic acid binding protein NABP 1 70 IPR012940 -
Cca04g00613 406 Gene3D - 51 397 IPR011989 -
Cca04g00613 406 ProSiteProfiles Pumilio RNA-binding repeat profile. 215 251 IPR001313 GO:0003723
Cca04g00613 406 CDD Pumilio 67 387 IPR033712 GO:0003723
Cca04g00613 406 PANTHER PUMILIO HOMOLOG 1-RELATED 1 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00613 Cca-Chr4 6071168 6074858 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00613 K17943 - gmx:100787039 783.482