Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00610 ATGTTGTCTGAATTGGGTAGAAGACCGGTGCTTGGGAGTAACGAGGGCTCTTTTGGTGATGAATTGGAGAAGGAGATAGGGATGTTGCTTCGGGAGCAACGCAGACAGGAGGCTGATGATCGTGAGCAAGAGCTCAATATATATAGGAGTGGATCAGCGCCTCCAACTGTGGAGGGTTCTTTGAGTGCTGTAGGAGGGTTGTTTGGTGGTGGCGGCAGCAGTGGCGCCGCTTCTACTGGTGAAAATGCTGGCTTTTCGGAGTTTAGAAGGACTAAAGATGTGAATGGGATTGCTTCTGAGGAAGAGCTTAGGTCTGATCCAGCTTATCTTTCATACTATTACTCCAATGTGAATTTGAATCCTAGGCTGCCGCCTCCTTTGCTGTCAAAGGAGGATTGGAGGTTTCAACAAAGACTTAAAGGTGGAGCTTCAGTTCTGGGTGGAATTGGAGATAGGAGGAAGGTGAACAAGCCTGATGATAATGGTGGTAGATCGCTGTTTTCTACCCCACCGGGTTTCAACATGAGGAAACAAGAGAATGAGGTGGACAATGAAAAGACCAGAGGTTCTGCCGAGTGGGGTGGTGATGGACTGATTGGTTTGCCTGGACTAGGGCTGAGCAAACAGAAGAGCTTTGCAGAAATTTTCCAGGATGATTTGGGGCGTAATACTTCTGTTGCAAGTATTCCTTCTCGTCCATCTAGTCGTAATGCATTTGATGAAAATGACATCATGGGTTCTGCTGAAGCAGAGATGGCTCATGCACGCCGTGAGCCCACAGCCACTGATGCGTTAAGATCAGGATCAAATGTTCAAGGATCATCTGCAGCCCAAAATATTGGTCAGCCAACTTCATATTCGTATGCTGCTGTACTAGGATCTTCCTTGTCAAGAAGTACCACTCCTGATCCACAACTTGTTGCTAGGGCTCCCAGTCCCTGCATCACGCCTATTGGTGGCGGCAGAACCATTGCCTCTGACAAAAGAGTTATTGCCAGTACAGATGCATTTAATGGTGTTTCATCTGGCATCAATGAGTCAGGAGATCTTGTGGCTGCATTGTCAGGGATGAACTTATCAGCAGATGATATGTTAGATGGTGAAAACTGTTTGCCATCACAGGTTGAATCAGATGTTGATAACCATCAGAGATATCTTTTTGGTAGGCAAGGTGGTCAAGATCATGGTAAGCAACATGCTTATTTAAAGAAGTCTGAATCAGCGCACGTGCAAAATTCAGGTAAGAGCAGGAGTGGGTCAGATTTCAACAATTCATCCCTGGATAGGCAGGTTGAGCTGCAAAAGTCTACTGTTCCTTCCAATAACTCATATTTCAAAGGATCGCCTACCTCCCATTTTAGTAGAGGAGGTAGTTCGCCACCTCAGTACCAGCCTTTAGATGGTACAAATTCATTGTTTACTAACTACGGTCTGAGTGGGTATGCTGGAAATCCAGCATTGGCATCCTTGATGACTAACCAACTTGGCACTGCTAACCTGCCGCCCTTATTTGAAAATGTTGCTGCAGCATCAGCAATGGGGGCCCCTGCAATGGACTCAAGAATTATTGGGGGTGGTTTGGCTTCTGGAGGTGCTGCTCCATCTGATGTGCATAATCTTGGTAGGATGGGAAATCAAATTCCTGGCAGTGCTCTTCAGGCTCCTTTTGTTGATCCCATGTATCTTCAATACCTGAGGACATCTGAATATGCTGCAGCACAACTTGGTGCTCTTAATGACCCCTCTATGGACAGGAACTACTTTGGGAATTCGTACATGAATTTACTTGAGCTTCAGAAAGCTTATCTAGGGTCTATCCTCTCTCCTCAGAAATCGCAATACAATGTATCACTGGGTGGGAAATCAGGCAGCTCCACTCCTCATGGTTATTATGGAAATCCTGCATATGGTGTCGGGATGTCTTACCCAGGAAGTCCAATGGCAAACTCTGTTTTATCCACTTCTCCAGTTGGTTCTGGAAGTCCTGTTAGGCACAATGAACTAAATGTACGTTTTGCTTCTGGAATGAGGAATTTAGCTGGGGTCATGGGACCTTGGCATGTAGATAATGGGAACATTGATGAAAGTTTTGCTTCTTCTCTGTTGGAAGAGTTTAAAAGCAATAAAACAAAATGTTTTGAGCTCTCTGAAATTTCTGGTCATGTTGTTGAATTCAGTGCGGATCAATATGGGAGCCGGTTTATTCAACAAAAGCTTGAAACAGCTACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCGCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCTTGGCCATGTTCTAACACTTAGCCTTCAAATGTATGGTTGCCGGGTCATTCAGAAGGCTATCGAAGTTGTTGATTTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTCATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCATTCAGAAGTGTATTGAATGTGTCCCTGAAGATGCAATACACTTTATTGTCTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGTCGGGTGATACAGAGAGTATTGGAGCACTGCAAAGACCCTACAACACAGCAGAAAGTTATGGATGAGATTTTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTATGTTGTTCAGCATGTACTGGAACATGGGAAGCCTCATGAACGCTCTTCTATAATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAAAAGTTTGCCTCCAATGTTGTGGAGAAATGTTTGACCTTTGGTGGTCCTTCTGAGCGCCAATTACTAGTGAATGAAATGCTTGGCTCCACAGATGAAAATGAGCCTCTTCAGGCGATGATGAAAGATCAATTTGCAAATTACGTAGTACAAAAGGTGCTGGAAACTTGTGACGATCAACAACGCGAGCTGATTCTTTCAAGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCACATCGTTGCACGTGTCGAAAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCTGCTCAGTCTCCTCAACCTGCTTAG 3159 0.44 MLSELGRRPVLGSNEGSFGDELEKEIGMLLREQRRQEADDREQELNIYRSGSAPPTVEGSLSAVGGLFGGGGSSGAASTGENAGFSEFRRTKDVNGIASEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGASVLGGIGDRRKVNKPDDNGGRSLFSTPPGFNMRKQENEVDNEKTRGSAEWGGDGLIGLPGLGLSKQKSFAEIFQDDLGRNTSVASIPSRPSSRNAFDENDIMGSAEAEMAHARREPTATDALRSGSNVQGSSAAQNIGQPTSYSYAAVLGSSLSRSTTPDPQLVARAPSPCITPIGGGRTIASDKRVIASTDAFNGVSSGINESGDLVAALSGMNLSADDMLDGENCLPSQVESDVDNHQRYLFGRQGGQDHGKQHAYLKKSESAHVQNSGKSRSGSDFNNSSLDRQVELQKSTVPSNNSYFKGSPTSHFSRGGSSPPQYQPLDGTNSLFTNYGLSGYAGNPALASLMTNQLGTANLPPLFENVAAASAMGAPAMDSRIIGGGLASGGAAPSDVHNLGRMGNQIPGSALQAPFVDPMYLQYLRTSEYAAAQLGALNDPSMDRNYFGNSYMNLLELQKAYLGSILSPQKSQYNVSLGGKSGSSTPHGYYGNPAYGVGMSYPGSPMANSVLSTSPVGSGSPVRHNELNVRFASGMRNLAGVMGPWHVDNGNIDESFASSLLEEFKSNKTKCFELSEISGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLASQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPQPA 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00610 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 970 1011 IPR001313 GO:0003723
Cca04g00610 1052 SMART pum_5 825 860 IPR001313 GO:0003723
Cca04g00610 1052 SMART pum_5 976 1011 IPR001313 GO:0003723
Cca04g00610 1052 SMART pum_5 717 752 IPR001313 GO:0003723
Cca04g00610 1052 SMART pum_5 898 933 IPR001313 GO:0003723
Cca04g00610 1052 SMART pum_5 861 897 IPR001313 GO:0003723
Cca04g00610 1052 SMART pum_5 753 788 IPR001313 GO:0003723
Cca04g00610 1052 SMART pum_5 789 824 IPR001313 GO:0003723
Cca04g00610 1052 SMART pum_5 934 969 IPR001313 GO:0003723
Cca04g00610 1052 Pfam Pumilio-family RNA binding repeat 793 826 IPR001313 GO:0003723
Cca04g00610 1052 Pfam Pumilio-family RNA binding repeat 939 972 IPR001313 GO:0003723
Cca04g00610 1052 Pfam Pumilio-family RNA binding repeat 904 935 IPR001313 GO:0003723
Cca04g00610 1052 Pfam Pumilio-family RNA binding repeat 757 790 IPR001313 GO:0003723
Cca04g00610 1052 Pfam Pumilio-family RNA binding repeat 984 1013 IPR001313 GO:0003723
Cca04g00610 1052 Pfam Pumilio-family RNA binding repeat 865 900 IPR001313 GO:0003723
Cca04g00610 1052 Pfam Pumilio-family RNA binding repeat 836 859 IPR001313 GO:0003723
Cca04g00610 1052 Pfam Pumilio-family RNA binding repeat 721 755 IPR001313 GO:0003723
Cca04g00610 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 861 897 IPR001313 GO:0003723
Cca04g00610 1052 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1045 - -
Cca04g00610 1052 MobiDBLite consensus disorder prediction 405 468 - -
Cca04g00610 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 717 752 IPR001313 GO:0003723
Cca04g00610 1052 Pfam Nucleic acid binding protein NABP 309 716 IPR012940 -
Cca04g00610 1052 Gene3D - 697 1043 IPR011989 -
Cca04g00610 1052 MobiDBLite consensus disorder prediction 387 468 - -
Cca04g00610 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 898 933 IPR001313 GO:0003723
Cca04g00610 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 825 860 IPR001313 GO:0003723
Cca04g00610 1052 CDD Pumilio 713 1033 IPR033712 GO:0003723
Cca04g00610 1052 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1045 - -
Cca04g00610 1052 MobiDBLite consensus disorder prediction 47 84 - -
Cca04g00610 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 789 824 IPR001313 GO:0003723
Cca04g00610 1052 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 697 1037 IPR033133 GO:0003723
Cca04g00610 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 934 969 IPR001313 GO:0003723
Cca04g00610 1052 SUPERFAMILY ARM repeat 700 1034 IPR016024 -
Cca04g00610 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 753 788 IPR001313 GO:0003723
Cca04g00610 1052 MobiDBLite consensus disorder prediction 144 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00610 Cca-Chr4 6054617 6060489 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00610 K17943 - gmx:100803806 1842.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00610 04 6054617 6060489 Cca04g00610 04 6054617 6060489 ECH