Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00608 ATGCATGGGCTACTCAGAAGCAGAATTCCCAAGAGCAACGGCATCATCAACCGTCGATTTTTCCGATCAGAACCCGAATCCTATGCTCAACTCATCAATATATACGCTCGCGATCGAGCGTTTCACCTTGGCAAGAAGCTTCACGCCCACCTAATCACCAACGGCTTTGCTCGTTTCAACCTCATTGCTTCCAACCTCGTGTCCCTTTACGCATGCTGTGGCCAACTCTCCCACGCGCGGAAACTGTTCGACAAAATTCCCACAACAAATGTTCGCCGCTGGATCGCCCTCATTGCCACGTGCGCTCGATGTGGCTTCTACCATCATGCTCTTGCCGTGTTTTCTGAGATGAGATCCGAACAAGGGCTTACACCCAATTACGCGTTCGTCATCCCAAGCGTTCTCAAAGCTTGCGGCCACGTAGGGGATCAAATCACCGGAGAGAAAATTCATGGCTTCATTTTGAAGTGTTCGTTTGAACTTGATTCTTTTGTGTCCAGTTCCTTAATTGTAATGTACTCCAAGTGCGCGAAAGTTGAGGATGCACGCAAGGTGTTTGATGGGATGTCTGTGAAAGACACGGTGGCTCTAAATGCTATTATTGCTGGGTACGTTCAACAGGGTGCTGCTAATGAGGCGCTTGGTTTGGTGAAAAGTATGAAGTTGATGGGTTTGAAGCCAAATGTGGTGACATGGAACTCTTTGATATCCGGTTTTTCGCAGAAAGGTGACCAAGGAATGGTGTCTGAGATTTTTGGGTTGATGATTGCAGATGGGGTGGAACCCGATGTGGTTTCATGGACTTCTGTTATATCTGGTTTTGTACAGAATTTTCGTAATAAGGAAGCATTTGATACGTTTAAGCAAATGTTGAGTCATGGGTTCTGCCCAACATCGGCTACTATCAGCACCCTTTTGCCTGCTTGTGCCACTGCAGCAAGAGTTAGGGTTGGGAGAGAGATTCATGGCTATGCTTTGGTGACTGGGGTGGAGGAAGATATATATGTAAGGAGTGCTCTTGTTGACATGTATGCAAAATGTGGGTTCATTTCTGAAGCGACGAGTTTGTTTAGTAGGATGGCAGAGAAGAACACTGTTACATGGAACTCTATCATTTTTGGTTTTGCAAATCATGGGTATTGCAAAGAAGCTATTGAGCTCTTCAATCAGATGGAGAAGGAAGGGGCAGCCAAGCTGGATCATTTAACTTTCACGGCAGCTCTCACTGCATGCAGTCATGATGGAGATATTGAACTTGGGCAGAGGCTGTTCAAGATTATGCAAGAAAAATACGGTATTGAGCCAAGACTGGAGCATTATGCGTGCATGGTGGATCTCCTTGGTCGAGCAGGGAAACTTGTTGAAGCATATGGCATGATCAAGACGATGCCTGTTGAACCTGATTTGTATGTGTGGGGTGCATTACTAGCTGCTTGTAGAAATCATGGGCATGTGGAGCTTGCAGAAGTGGCTGCTATGCATTTGATGGAATTAGAGCCCGAGAGTGCTGCAAACCGTCTTCTGTTGTCTAGCGTATATGCCGATGCTGGCAAATGGGGAAAGGTTGAGAGGATCAAGAAAAGGATAAAGAAGGGAAAACTCAGAAAACTTCAAGGTTTGAGTTGGATAGATAATTTATAA 1641 0.4576 MHGLLRSRIPKSNGIINRRFFRSEPESYAQLINIYARDRAFHLGKKLHAHLITNGFARFNLIASNLVSLYACCGQLSHARKLFDKIPTTNVRRWIALIATCARCGFYHHALAVFSEMRSEQGLTPNYAFVIPSVLKACGHVGDQITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMSVKDTVALNAIIAGYVQQGAANEALGLVKSMKLMGLKPNVVTWNSLISGFSQKGDQGMVSEIFGLMIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFCPTSATISTLLPACATAARVRVGREIHGYALVTGVEEDIYVRSALVDMYAKCGFISEATSLFSRMAEKNTVTWNSIIFGFANHGYCKEAIELFNQMEKEGAAKLDHLTFTAALTACSHDGDIELGQRLFKIMQEKYGIEPRLEHYACMVDLLGRAGKLVEAYGMIKTMPVEPDLYVWGALLAACRNHGHVELAEVAAMHLMELEPESAANRLLLSSVYADAGKWGKVERIKKRIKKGKLRKLQGLSWIDNL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00608 546 Pfam E motif 482 544 IPR046848 -
Cca04g00608 546 Gene3D Tetratricopeptide repeat domain 338 545 IPR011990 GO:0005515
Cca04g00608 546 Gene3D Tetratricopeptide repeat domain 209 325 IPR011990 GO:0005515
Cca04g00608 546 Gene3D Tetratricopeptide repeat domain 16 151 IPR011990 GO:0005515
Cca04g00608 546 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 192 239 - -
Cca04g00608 546 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 41 120 - -
Cca04g00608 546 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 240 545 - -
Cca04g00608 546 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 88 190 - -
Cca04g00608 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Cca04g00608 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 363 IPR002885 -
Cca04g00608 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Cca04g00608 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Cca04g00608 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Cca04g00608 546 Pfam PPR repeat 167 190 IPR002885 -
Cca04g00608 546 Pfam PPR repeat 94 120 IPR002885 -
Cca04g00608 546 Pfam PPR repeat 65 86 IPR002885 -
Cca04g00608 546 Pfam PPR repeat 440 463 IPR002885 -
Cca04g00608 546 Pfam PPR repeat family 262 310 IPR002885 -
Cca04g00608 546 Pfam PPR repeat family 192 240 IPR002885 -
Cca04g00608 546 Pfam PPR repeat family 363 412 IPR002885 -
Cca04g00608 546 PANTHER OS03G0271300 PROTEIN 240 545 - -
Cca04g00608 546 PANTHER OS03G0271300 PROTEIN 41 120 - -
Cca04g00608 546 PANTHER OS03G0271300 PROTEIN 192 239 - -
Cca04g00608 546 PANTHER OS03G0271300 PROTEIN 88 190 - -
Cca04g00608 546 TIGRFAM PPR: pentatricopeptide repeat domain 196 229 IPR002885 -
Cca04g00608 546 TIGRFAM PPR: pentatricopeptide repeat domain 230 264 IPR002885 -
Cca04g00608 546 TIGRFAM PPR: pentatricopeptide repeat domain 366 395 IPR002885 -
Cca04g00608 546 TIGRFAM PPR: pentatricopeptide repeat domain 265 298 IPR002885 -
Cca04g00608 546 TIGRFAM PPR: pentatricopeptide repeat domain 96 126 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00608 Cca-Chr4 6037291 6039218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00608 74 544 Glycoside Hydrolase AT3G49170 32.742 5.64e-87 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00608 - - gmx:100790576 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00608 04 6037291 6039218 Cca04g00608 04 6037291 6039218 ECH