Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00605 ATGGCATCAACTACTCTCTTCAGCTTCAGGCTCTCTCTGGTTAACCCACTGCACCATCAACCGATAAAGAGACCAAAAGCTCTACTCTCCTCTTCTCGCATCAATCCACGCCTCGTTTCTCCCATTAACAATCATTTGTCGCTCACACGTCTCACATATCCACTTATCCTATCTCGCTCTTCTCCTAACCGCAGATTCCACGTTGGAGTACAGAAAGAGTATTCTGATGGGGAAAGCTCCGAGTCGCTTGTTTCTGACACAACAAACCAAGAGGAATTCTCTTGGTCTTCTGTAATTCTTCCGTTTGTGTTTCCTGCATTGGGTGGCTTGTTATTTGGTTATGATATTGGTGCCACCTCCGGTGCTACAATCTCACTGCAGTCACCTGATCTTAGCGGTATATCATGGTTCAATCTTTCTGCCGTTCAGCTTGGACTTGTGGTCAGTGGTTCCCTATATGGGGCTCTACTTGGCTCGCTTCTTGCATATGCCATAGCTGATTTCCTTGGGAGGAAGCGACAACTCATTGCTGCTGCCCTGTTGTATGTGTTTGGTGGTGTGATTACTGCCTATGCACCAGAACTTGGCGTGCTCTTAGCAGGAAGGCTACTTTATGGACTTGGTATAGGTTTGGCCATGCATGGGGCTCCTTTATATATTGCGGAGACTTGTCCATCACAAATCCGTGGGACTCTAGTATCATTGAAAGAACTCTTCATTGTCCTGGGGATTCTGCTGGGTTATTTTGTGGGTAGCTTTCTGATTAATACAGTTGGGGGATGGCGGTTCATGTATGGCTTTAGTGCTCCAGTCGCTGTATTAATGGGGCTTGGAATGTGGACTCTCCCCCCTTCTCCACGGTGGCTGCTTCTCAGAGCAGTGCAAGGAAAAGGTTCTTTTCAAGAATTGAAGGAAAAGGCAATTGTTTCCCTGAGCAAATTAAGGGGCCGACCAGCTGGTGACAAAGAATCTGAAAAGCAAATAGAAGAGACCCTTGTCTCATTAAAGTCTGCCTATGCAGATCAGGAATCAGAGGGGAATTTCTTAGAGGTGTTTCAGGGTCCCAATCTGAAAGCTTTCATAATTGGAGGGGGACTAGTGTTATTTCAGCAGATAACAGGTCAACCAAGTGTTCTGTACTATGCAGGACCAATTCTTCAGAGTGCTGGATTTTCTGCTGCATCTGATGCTACTAAAGTTTCAGTTGTTATTGGCTTATTCAAGTTACTAATGACTTGGATTGCTGTCCTAAAAGTTGATGATTTGGGGAGAAGACCTCTGCTGATTGGAGGCGTCAGTGGCATTGCCATTTCTCTTGTTCTCCTTTCGGCTTATTATAAATTTCTTGGAGGGTTCCCACTTGTTGCTGTTGGAGCTTTACTTCTTTATGTTGGTTGCTACCAGATATCATTTGGGCCAATAAGTTGGCTAATGGTATCAGAGATCTTCCCTCTTCGCACTAGAGGAAAGGGGATAAGCCTGGCTGTACTTACCAACTTTGCTTCAAATGCTGTTGTCACCTTTGCCTTCTCCCCATTAAAGGAGCTTCTAGGAGCAGAGAATCTTTTTCTCCTCTTTGGCGCTATTGCTCTTCTGTCACTTCTGTTCATTATATTTTCTGTCCCAGAGACAAAAGGCTTGAGTTTAGAAGATATAGAATCCAAAATCTTGAAGTGA 1677 0.4478 MASTTLFSFRLSLVNPLHHQPIKRPKALLSSSRINPRLVSPINNHLSLTRLTYPLILSRSSPNRRFHVGVQKEYSDGESSESLVSDTTNQEEFSWSSVILPFVFPALGGLLFGYDIGATSGATISLQSPDLSGISWFNLSAVQLGLVVSGSLYGALLGSLLAYAIADFLGRKRQLIAAALLYVFGGVITAYAPELGVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLGILLGYFVGSFLINTVGGWRFMYGFSAPVAVLMGLGMWTLPPSPRWLLLRAVQGKGSFQELKEKAIVSLSKLRGRPAGDKESEKQIEETLVSLKSAYADQESEGNFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAASDATKVSVVIGLFKLLMTWIAVLKVDDLGRRPLLIGGVSGIAISLVLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGKGISLAVLTNFASNAVVTFAFSPLKELLGAENLFLLFGAIALLSLLFIIFSVPETKGLSLEDIESKILK 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00605 558 PRINTS Sugar transporter signature 109 119 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00605 558 PRINTS Sugar transporter signature 199 218 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00605 558 PRINTS Sugar transporter signature 370 380 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00605 558 PRINTS Sugar transporter signature 457 478 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00605 558 PRINTS Sugar transporter signature 480 492 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00605 558 SUPERFAMILY MFS general substrate transporter 88 553 IPR036259 -
Cca04g00605 558 CDD MFS_GLUT10_12_Class3_like 104 552 - -
Cca04g00605 558 Gene3D MFS general substrate transporter like domains 92 556 IPR036259 -
Cca04g00605 558 Coils Coil 325 345 - -
Cca04g00605 558 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 3, CHLOROPLASTIC 71 558 - -
Cca04g00605 558 ProSiteProfiles Major facilitator superfamily (MFS) profile. 101 545 IPR020846 GO:0022857
Cca04g00605 558 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 71 558 - -
Cca04g00605 558 Pfam Sugar (and other) transporter 104 553 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca04g00605 558 TIGRFAM SP: MFS transporter, sugar porter (SP) family 89 552 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00605 558 ProSitePatterns Sugar transport proteins signature 2. 204 229 IPR005829 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00605 Cca-Chr4 6023394 6027279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00605 14 558 Organic Solute Cotransporters AT5G59250 73.779 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00605 - - gmx:100809316 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00605 04 6023394 6027279 Cca04g00605 04 6023394 6027279 ECH