Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00603 ATGTCGGGCGGTTTCTTTCGAGGCACATCCGCGGATCAGGACACTCGGTTTTCGAACAAGCAAGCGAAGCTGATGAAATCGCAGAAGTTTGCACCGGAATTGGAGCATCTGGTGGACATGACGAAGGTGAATATGGAAGTAATTAAGCCTTGGATCACCCGAAGGGTAACTGAACTTCTTGGATTCGAAGATGAAGTGCTTATTAACTTCATACACAGTCTTCTGGATGCAAAGGAAGTGAATGGGAAAGAAGTTCAAATACAAATTACTGGATTTATGGAAAAAAATACTGGAAAGTTCATGAAAGAGCTCTGGACACTTCTTCTCAGTGCACAAAAAAATGCCAGTGGTGTTCCTCAGCAGTTCTTGGATGCCAAGGAAGAAGAACTCCTGAAGAAGAAGGCCGAAAATGATCGGATAACAAGTGAAGTTCAGAGGAAAAAAGATAAGGAAGGTAGAGAGCTCATGGAAGAGAGGCTGAAGAAACTGGACGGTGGATTTGATTCCAAGGATAATGATACAGCATCAGACCCAACCTTGAGGCTCAGGGATTCTGGTTTCTATGATCGTGACGGGAAGGAAACTGACAAGAGGAATGGTGTTAGAGCAAGGAGCAGGCATTCTAGGTCCCCACATTCACCTGCAGTTTCTGCTTCACCTCACCGAGGTTCACCTTCAAGGTCAATGAGCAAATCATTTTCAAATTCTCGAAGTTATTCAGGTGGTAGACACAAGTCAAGGAGTGTATCCAGGTCTACAGAGGCTCGAGGACGCTCTCCTTCTTCTGAAAGGATTCGCCGATCTCCACGACGACGATCTGTTTCTCCTCACAGGCATTCACCACGTCGTTCTCCTCATAGGAGATTGCCTTATTCAAGGAGAAGATCTAGATCCCGCTCAAGTTACAGATCTCCTTCTCCTGTACGACGTAGAATGCATTCTCCATTCCATCGAAGTTCGCCTTCTTTCCGTCGACGTAGATCACCTTCTCCAGTGAGGCGACGTAGATCACCTTCTCCAGTGAGGCGACGTGGATCACCTTCTCCAGTGAGGCGGCGAGGATCACCTTCTCCTGTGAGGCGGCGAGGATCACCTTCTCCTGTGAGGCGGCGAGGATCACCTTCTCCAGTGCGACGACGTAGATCACCTTCTCCAGTGCGACGACGTAGATCACCTTCTCCAGTGCGACGACGTAGATCACCTTCTCCAGTACGCCGGCGTAGATCACCTTCTCCAGTACGCCGGCGTAGATCACCTTCTCTTGGGCATCGACATAGATCACCTTCACCTATTGGACGACGGAGGTTGCTTTCACCTAGACGAAGAAGATCTCCTGTCACTCGGCATAGGTCACCTTCACCAGGGCGTCGAATACCACCAACCAATGTACGACATAGATCAGACTCCCCTATGCAGTCCCCCTCCCCTATACGACGAAGGTATGGTAGTAGAACTCCTCCACACTCTCCATCTCCATTGCGACGTAGGTCTCCTATTTCTGGTAAGAGAAGATCTCCTAGTATCTCCCCACAAAGGTCTCCTCGAGATGATTGGAGTTCTCAGTCTCCTGTACGGCGTGTATCTCCATCTCCGATTAGAAAAGATTCCCCAAGACACCAAAAAAGTCCTTTGCAGTCTTCTATGGGGAGAGTCAGAACCCAAGAAAGATTGTCATCTGAGGCAAATCAACCCTCTAGTCCTTTAGGGCCTATACGAAGAGATAAAGGTGGCAGAGCTTCTCACTATAATTCAAAAGATTCAATGTCCACACCTGAGAAGTCTCGAATTCGATCTGTATCTCCAGAAGCAAGGAGTGAGACCAGCAGTGAAGGGAGAAGTCCTCATGAGAGCCCTGTGAAGCAAAGAAGGGAAAAATTGACCAATGAAAGAAGCTTGAGTCCTCTGAAGAAACAAAGAACCCATAAACCTAGCATTGACAGCCCAGAGACAAGAGCCGAAGCAGAAGAAACATACTATTCCAGAGAAAGCAGAGATCCTAAAATGAATTCATCACAAAAGATATCAAAACATTCCCCGGTTAGTATGCGGAAAGGTTCACCTGCAAAATATCGTCATGAGGATGAGTTTTCTCCTGAAAAGGTGGCAGCTCATCCAACTTCTGAATATCGTCATTATGATAATAATGATGGGAGAAAGACAGGCCGGGATATAAAACGTGATAAATCTTCTGGAAAGGGCAGTGAATTTCCTGCTCAACAGAAGACATCAGCGGACAAAGAAACTTTTTCCCGGGAGAAGCCTCATGAATCCTATGCTGTAGATATTAAGAAATCAGATGACAAGGACCAATCCCATTTTGCCAAAAGTAGTGACCGGCACCACAAATCTGAAGCCACTCAAGATCTAGTTGGAAAAAATGATCGTGCCAATCAGAGTGCTTCATATGATTCTGTTTCTGAGGAGAGTGGTAAGCATAGACGGGAGGGAAAGGATAGGAGAAAGCATAAAAGGTCTGAGAAAAAGTATGCGTCTTCCGACGGAGATTATAGTTATGATTCTGAGTTAGAGGACAGGAaagaagctaagaagaggaaaaaagaggagaagaagctgcggaaggaggagaagCGTCGAAGACGTGAGGAGAGGCGTCGCAGAAGGGAAGAACGGCGTGCAGAGAAGCTGAAAATGAAGAGTAAAACAGACTATATTTCAGATGATGAGGAAGCTGAACGAATGGATTATCATCACAGTGATAGTGAAGAGACACCATCTGAGCAAAAGAAGCTTGAGATTGAATTACGGAACAAGGCTCTTGAATCCCTCAAAGCAAAGAGGGACATTGCCCTGTTTTTACTGATGAATTTTATGTCAACTCTAGATGACCTGGTGAGAAGACCATGTGCAGATCTATATTTTGAACCTCAATTCAGGGTTTATCGAACGAGATCCTTGGGCAGTTGCGCTATAAAAGTCATGCGATTTCACCTGGTCTGGACTCTGGACTCCATCCAAACGACAGTAAAAACATACTGCTACTATTCTCGCCTTGAACGATGGCGAGTTAGCACACTAATTGACGGATGA 3048 0.4531 MSGGFFRGTSADQDTRFSNKQAKLMKSQKFAPELEHLVDMTKVNMEVIKPWITRRVTELLGFEDEVLINFIHSLLDAKEVNGKEVQIQITGFMEKNTGKFMKELWTLLLSAQKNASGVPQQFLDAKEEELLKKKAENDRITSEVQRKKDKEGRELMEERLKKLDGGFDSKDNDTASDPTLRLRDSGFYDRDGKETDKRNGVRARSRHSRSPHSPAVSASPHRGSPSRSMSKSFSNSRSYSGGRHKSRSVSRSTEARGRSPSSERIRRSPRRRSVSPHRHSPRRSPHRRLPYSRRRSRSRSSYRSPSPVRRRMHSPFHRSSPSFRRRRSPSPVRRRRSPSPVRRRGSPSPVRRRGSPSPVRRRGSPSPVRRRGSPSPVRRRRSPSPVRRRRSPSPVRRRRSPSPVRRRRSPSPVRRRRSPSLGHRHRSPSPIGRRRLLSPRRRRSPVTRHRSPSPGRRIPPTNVRHRSDSPMQSPSPIRRRYGSRTPPHSPSPLRRRSPISGKRRSPSISPQRSPRDDWSSQSPVRRVSPSPIRKDSPRHQKSPLQSSMGRVRTQERLSSEANQPSSPLGPIRRDKGGRASHYNSKDSMSTPEKSRIRSVSPEARSETSSEGRSPHESPVKQRREKLTNERSLSPLKKQRTHKPSIDSPETRAEAEETYYSRESRDPKMNSSQKISKHSPVSMRKGSPAKYRHEDEFSPEKVAAHPTSEYRHYDNNDGRKTGRDIKRDKSSGKGSEFPAQQKTSADKETFSREKPHESYAVDIKKSDDKDQSHFAKSSDRHHKSEATQDLVGKNDRANQSASYDSVSEESGKHRREGKDRRKHKRSEKKYASSDGDYSYDSELEDRKEAKKRKKEEKKLRKEEKRRRREERRRRREERRAEKLKMKSKTDYISDDEEAERMDYHHSDSEETPSEQKKLEIELRNKALESLKAKRDIALFLLMNFMSTLDDLVRRPCADLYFEPQFRVYRTRSLGSCAIKVMRFHLVWTLDSIQTTVKTYCYYSRLERWRVSTLIDG 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00603 1015 MobiDBLite consensus disorder prediction 373 450 - -
Cca04g00603 1015 MobiDBLite consensus disorder prediction 790 805 - -
Cca04g00603 1015 MobiDBLite consensus disorder prediction 856 872 - -
Cca04g00603 1015 PANTHER SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN 1 430 - -
Cca04g00603 1015 MobiDBLite consensus disorder prediction 745 789 - -
Cca04g00603 1015 Pfam PWI domain 46 115 IPR002483 GO:0006397
Cca04g00603 1015 MobiDBLite consensus disorder prediction 161 201 - -
Cca04g00603 1015 PANTHER SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN 397 933 - -
Cca04g00603 1015 MobiDBLite consensus disorder prediction 161 915 - -
Cca04g00603 1015 MobiDBLite consensus disorder prediction 541 566 - -
Cca04g00603 1015 SMART pwi_2 40 114 IPR002483 GO:0006397
Cca04g00603 1015 MobiDBLite consensus disorder prediction 210 246 - -
Cca04g00603 1015 Coils Coil 838 885 - -
Cca04g00603 1015 MobiDBLite consensus disorder prediction 247 269 - -
Cca04g00603 1015 MobiDBLite consensus disorder prediction 608 671 - -
Cca04g00603 1015 MobiDBLite consensus disorder prediction 827 855 - -
Cca04g00603 1015 Coils Coil 123 143 - -
Cca04g00603 1015 MobiDBLite consensus disorder prediction 873 915 - -
Cca04g00603 1015 MobiDBLite consensus disorder prediction 465 479 - -
Cca04g00603 1015 Gene3D PWI domain 33 125 - -
Cca04g00603 1015 MobiDBLite consensus disorder prediction 686 732 - -
Cca04g00603 1015 PANTHER SERINE/ARGININE REPETITIVE MATRIX PROTEIN 1 1 430 - -
Cca04g00603 1015 PANTHER SERINE/ARGININE REPETITIVE MATRIX PROTEIN 1 397 933 - -
Cca04g00603 1015 SUPERFAMILY PWI domain 25 132 IPR036483 GO:0006397
Cca04g00603 1015 MobiDBLite consensus disorder prediction 502 527 - -
Cca04g00603 1015 ProSiteProfiles PWI domain profile. 27 125 IPR002483 GO:0006397
Cca04g00603 1015 MobiDBLite consensus disorder prediction 270 349 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00603 K13171 - gmx:100810238 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00603 04 5998085 6006130 Cca04g00603 04 5998085 6006130 ECH