Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00602 ATGGCTCCCACTCTTACATCAAATTCATCTCTCTTAGCCACGACGCCTCATTCAAGGTTGAGCCTCCGTAATCCAAGGGTGAGAGTGTTTGCTAAGAAGTCTGGATCATTCCCATCATTTGGGCTAGGCAAACCCAAAGACGATTCTTCTCCTGAAGAAGGAGACACCTCATCCAATTCCAACCCCTTTCGTTTGAACTTGGGAAAGTTACCCGACGTAACTTCCTTGATCCCTGTTCCAACCAACAACACTTCTTCTTCGCCAGGCTTTTCATTTGGAAACCCAAGGCGCAAGGACCCTTCCACCGTCTTTGTCGCTGGCGCATCAGGCCAAGCTGGTATTCGCATTGCACAAACGCTGCTTAGGGAAGGTTTTAGTGTACGTGCTGGAGTCCCCGAACTTGCTTCTGCACAAGAACTCGCTCGTCTTGCTGCTCAATACAAGATAATATCAAATGAACAAGCAAAGCGTCTGAACGCTGTGCAGTCAAGTTTTGAGAATGCAGACTCAATAGCCAAAGCAATAGGCAACGCCAGCAAGGTGGTTGTGACCATTGGTCCCACAGAGAATGGTCCAACCGCAGAGGTGTCCACATCAGACGCCTTGCAAGTGGTTCAGGCCGCACAGCTCGCAGGAGTAGGCCACGTGGCAGTCATCTACGACGAGACCACCGCCGGAGCCTCTACCTACAACGTACTCGATGGCCTCTCCTCCTTCTTCAACAACCTCTTCTCCCGGTCTCAACCGTTGACCATTCAAGAGTTCTTGCAGAAGGTCATTGAAACGGACGTCAAATACACCTTCATCAGGACAAGTTTGACCGATGATTTCACACCCGAGAGTTCCTACAATGTTGTCGTCTTAGGCGAAGGAAGCGCCAGTGCAAACGACTATAAAGTAGCCAAGTCCAAGATTGCATCGTTGGTTGCCGATGTCTTTTCCAACACTGAGGTAGCAGAAAACAAGGTTGTGAAAGTGTACTCGGATCCCAATGCTCCCTTGAAGCGTGTAGATGAACTTTTCAACACTATTCCTGAGGATGGAAGAAGGAAAGCCTATGCTGAAATGCaggtaaaagcaaaggcagaggaagaggcaagagTGGCTGCTGAGAAGGCCCGTGAAGCTGCTGATTCAGCAAAGAAGCTGGAAGAAGAGGTGAAAAAGCTTTCCCAGCAAGAAGCACTGGCTGCTAGTTTAGCTCAAGAGGCCCAAGAGAAGGCAGATGCAGCTGGGGCTTCAGTGGAAACCCTTTTGAACAAGGCAAAGGGTTTTGGTGCAGGGTTTTCCTGGGAAAAGTTGAGCACACAGATTACCACTTCAATCCAAAAACCTGATGGTGAGGAAGAGAAACCAAAGGTGCAGCTAGCCACTGTAAGGGGACAGGCCAAGGCTCGGAATCTGGCCCCCAACAAAGCAGTGGTTAAGCAAGCAACTCCGAGAAGGGCTGCTAGTAAACCAAAGGAGGAAAAACCAAAGCAGGCAGAGACAGCAAAGGAAGTGAGGAATGTATTTGGTGGCCTGTTCAAGCAAGAGACTATCTATGTTGATGATGACTAG 1560 0.4821 MAPTLTSNSSLLATTPHSRLSLRNPRVRVFAKKSGSFPSFGLGKPKDDSSPEEGDTSSNSNPFRLNLGKLPDVTSLIPVPTNNTSSSPGFSFGNPRRKDPSTVFVAGASGQAGIRIAQTLLREGFSVRAGVPELASAQELARLAAQYKIISNEQAKRLNAVQSSFENADSIAKAIGNASKVVVTIGPTENGPTAEVSTSDALQVVQAAQLAGVGHVAVIYDETTAGASTYNVLDGLSSFFNNLFSRSQPLTIQEFLQKVIETDVKYTFIRTSLTDDFTPESSYNVVVLGEGSASANDYKVAKSKIASLVADVFSNTEVAENKVVKVYSDPNAPLKRVDELFNTIPEDGRRKAYAEMQVKAKAEEEARVAAEKAREAADSAKKLEEEVKKLSQQEALAASLAQEAQEKADAAGASVETLLNKAKGFGAGFSWEKLSTQITTSIQKPDGEEEKPKVQLATVRGQAKARNLAPNKAVVKQATPRRAASKPKEEKPKQAETAKEVRNVFGGLFKQETIYVDDD 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00602 519 MobiDBLite consensus disorder prediction 76 92 - -
Cca04g00602 519 Gene3D - 93 335 - -
Cca04g00602 519 Coils Coil 353 421 - -
Cca04g00602 519 MobiDBLite consensus disorder prediction 482 498 - -
Cca04g00602 519 MobiDBLite consensus disorder prediction 1 21 - -
Cca04g00602 519 MobiDBLite consensus disorder prediction 1 96 - -
Cca04g00602 519 Pfam NAD(P)H-binding 107 315 IPR016040 -
Cca04g00602 519 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 101 334 IPR036291 -
Cca04g00602 519 MobiDBLite consensus disorder prediction 460 499 - -
Cca04g00602 519 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 16, CHLOROPLASTIC 1 519 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00602 - - gmx:100801140 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00602 04 5994022 5997854 Cca04g00602 04 5994022 5997854 ECH