Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00599 ATGGCTCAGGTAAACACAGGTAGCAAAAACAGATGGTCTTTGCAAGGGATGACGGCTTTGGTCACCGGTGGATCCAAAGGAATCGGATATGCTATTGTGGAGGAGCTGGCACAGCTTGGAGCCAGAGTACACACTTGCTCTCGTAACGAAGCTCAACTCAATGAATGCTTACATCAATGGACCGCAAAAGGATACAGAGTAACCGGTTCAGTTTGTGACATGGCGTCACGTGCAGACAGAAAAGAGCTCATAGCTAGAGTCTCCTCTGAGTTTAATGGCAAACTCAACATTCTTGTAAACAACGTGGGAACAAACGTACCCAAACGGACTTTGGATGTTACGGAGGAAGATTTCTCACTTCTGATTAGTACCAATCTTGAATCCTCTTACCACATAAGCCAGATTGCACATCCTCTCCTAAAAGCTTCAGAGGCTGCAAGCATCGTTTTTGTATCATCCATTGCTGGTGTGGTGTCGATAAATGTAGGATCCGTTTATGGTGCAACAAAAGGAGCAATGAACCAATTGACAAAAAATTTGGCTTGTGAGTGGGCCAAAGACAACATAAGGACTAATTCCGTAGCACCAGGGCCAATCAAAACCGCTCTTGCTGCCGAAGTTCTTAAATATCCAAAAATTCATGATGGTTTCATTTCGCAAACCCCACTTGGACGAATAGGAGAGGCAGAGGAGGTATCTTCATTGGTGGCGTTTCTGTGCTTACCTGCAGCCTCTTTCATAACAGGACAAACCATTTGTGTTGATGGCGGGCTAACGGTGAATGGTCTCCATGCAGACTTTGAATAG 807 0.4511 MAQVNTGSKNRWSLQGMTALVTGGSKGIGYAIVEELAQLGARVHTCSRNEAQLNECLHQWTAKGYRVTGSVCDMASRADRKELIARVSSEFNGKLNILVNNVGTNVPKRTLDVTEEDFSLLISTNLESSYHISQIAHPLLKASEAASIVFVSSIAGVVSINVGSVYGATKGAMNQLTKNLACEWAKDNIRTNSVAPGPIKTALAAEVLKYPKIHDGFISQTPLGRIGEAEEVSSLVAFLCLPAASFITGQTICVDGGLTVNGLHADFE 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00599 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 IPR002347 -
Cca04g00599 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 IPR002347 -
Cca04g00599 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 IPR002347 -
Cca04g00599 268 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 261 IPR036291 -
Cca04g00599 268 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 7 264 - -
Cca04g00599 268 Gene3D - 1 263 - -
Cca04g00599 268 Pfam Enoyl-(Acyl carrier protein) reductase 25 259 - -
Cca04g00599 268 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 153 181 IPR020904 GO:0016491
Cca04g00599 268 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Cca04g00599 268 PRINTS Glucose/ribitol dehydrogenase family signature 93 104 IPR002347 -
Cca04g00599 268 PRINTS Glucose/ribitol dehydrogenase family signature 140 156 IPR002347 -
Cca04g00599 268 PRINTS Glucose/ribitol dehydrogenase family signature 166 185 IPR002347 -
Cca04g00599 268 PRINTS Glucose/ribitol dehydrogenase family signature 187 204 IPR002347 -
Cca04g00599 268 PRINTS Glucose/ribitol dehydrogenase family signature 222 242 IPR002347 -
Cca04g00599 268 PANTHER TROPINONE REDUCTASE 7 264 IPR045000 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00599 Cca-Chr4 5971022 5975369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00599 10 263 Miscellaneous Gene Families AT2G29290 64.567 6.03e-120 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00599 K08081 - gmx:100780806 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00599 04 5971022 5975369 Cca04g00599 04 5971022 5975369 ECH